Telo065403.1
Basic Information
- Insect
- Tillus elongatus
- Gene Symbol
- -
- Assembly
- GCA_964006375.1
- Location
- OZ023268.1:7280793-7282133[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00048 0.088 15.6 2.4 3 23 119 140 118 140 0.96 2 10 0.005 0.92 12.4 6.3 1 23 146 169 146 169 0.98 3 10 1.4e-05 0.0025 20.5 1.9 1 23 175 198 175 198 0.98 4 10 0.062 11 9.0 2.0 1 23 204 227 204 227 0.92 5 10 9.8e-05 0.018 17.8 0.6 1 23 272 295 272 295 0.95 6 10 0.0031 0.58 13.1 5.1 1 23 301 324 301 324 0.98 7 10 0.00063 0.12 15.3 1.3 1 23 330 353 330 353 0.98 8 10 8.9e-05 0.016 17.9 3.5 1 23 359 382 359 382 0.98 9 10 8.5e-06 0.0016 21.1 1.0 1 23 388 411 388 411 0.96 10 10 0.043 7.8 9.5 2.5 1 23 417 440 417 440 0.97
Sequence Information
- Coding Sequence
- ATGTTTAATGTTCCTCCATCAAAGATTAATACCACCGATCAAAAGTTTAAATTTGAAACTAAGTCCCATCTTGACTTGGCAATTGAATTGGCCGAGTCAGAGCTGTGTTCGAAGAAATCTGTAAAATTGGAGATAGAAGAACATGACTTCAATCAACCACATCAGAAATTTAAGGACGAGAACGCTGTTGATGGATATGGTAGTGGTAAGCCCAGTCTGCATGCTGATGGTAAATGTGAGAGGCAGGAATTGTCCATAGATCCTGTGAAAGTAGCTGATGATGAAAAACTTGTATACACTGTATTAAATTGTAATAAAACATCACCAGATCAACCTGGGGTAAGGCTTAATCATTGTTTATTTTGTGATTATAAAACTGTACAAAAAGGAAATCTGCAAAGGCACATTAGAGTAAAACACATCAGAGAGaaaccttatcagtgttcatcttGTGATTTTAGATGTGGACAGAAACACACCTTACAAAACCACATTAGATCAAAACATACTGGAGAGAGACCTTATCAGTGTACATTTTGTGATTATTCAAGTGTAAACAAAAGTAATTTATCAaaccacattaaatcaaaacacactggtGAGAGACCTTATCATTGTATATTTTGTGATTATAGAGCTGTACAAAAAGGAAATTTTCAAAGGCACGTTAGAGTAAAACACACATTTTGTGATTATTCAAGTGTGAGCAAAGGTAATTTATGTTATGTTACAGTAAAACATACTGGAGAGAGACCATATCAAAAAGAAACCTTACAGGGCCACATTAGATCAAAGCATACTGGAGAGATACCTTATCTGTGTTCATTTTGTGATTATAGAGCTGTACAAAAAGGAAATTTGCAAAGGCACATTAGAGTAAAACACACTGGAGAGAAACCTTATCggtgttcatcttgtgattatagATGTGGACAGAAACACACCTTGGAAATCCACATTAGATCAAAACATACTGGAGAGAGGCCTTATCAGTGTACATTTTGTGATTATTCAAGTGTGAAGGGAAGTAATTTATCAaaccacattaaatcaaaacatactggAGAGAGACCTTATCAGTGTACATTTTGTGATCATTCGAGTATAAATAAAAGTAATTTATCAaaccacattaaatcaaaacacagcgGAGAGAGACCTTATCAGTGTACATTTTGTGATTATTCAAGTGTGAACAAAAGTAATTTACAACGTCATGTTATAGTAAAACATACTGGAGAGAGACCTTATCAGTGTCCTTTATGTGATCATGGGTGTGTAGAAAGAAGAAGGTTACAGCTTCACATTAGCTCAAAACACACTGTAGGTAGGCCTTATTAA
- Protein Sequence
- MFNVPPSKINTTDQKFKFETKSHLDLAIELAESELCSKKSVKLEIEEHDFNQPHQKFKDENAVDGYGSGKPSLHADGKCERQELSIDPVKVADDEKLVYTVLNCNKTSPDQPGVRLNHCLFCDYKTVQKGNLQRHIRVKHIREKPYQCSSCDFRCGQKHTLQNHIRSKHTGERPYQCTFCDYSSVNKSNLSNHIKSKHTGERPYHCIFCDYRAVQKGNFQRHVRVKHTFCDYSSVSKGNLCYVTVKHTGERPYQKETLQGHIRSKHTGEIPYLCSFCDYRAVQKGNLQRHIRVKHTGEKPYRCSSCDYRCGQKHTLEIHIRSKHTGERPYQCTFCDYSSVKGSNLSNHIKSKHTGERPYQCTFCDHSSINKSNLSNHIKSKHSGERPYQCTFCDYSSVNKSNLQRHVIVKHTGERPYQCPLCDHGCVERRRLQLHISSKHTVGRPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -