Telo041306.1
Basic Information
- Insect
- Tillus elongatus
- Gene Symbol
- -
- Assembly
- GCA_964006375.1
- Location
- OZ023265.1:43328258-43329955[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.72 1.3e+02 5.6 5.9 1 23 184 207 184 207 0.95 2 13 0.017 3.2 10.7 4.0 1 23 213 236 213 236 0.97 3 13 0.00062 0.11 15.3 1.2 1 23 242 265 242 265 0.96 4 13 0.00057 0.11 15.4 2.1 1 23 271 294 271 294 0.98 5 13 0.0013 0.24 14.2 1.5 1 23 300 323 300 323 0.96 6 13 0.015 2.8 10.9 0.7 1 23 329 351 329 351 0.98 7 13 0.0014 0.26 14.2 3.1 1 23 357 380 357 380 0.97 8 13 5.3e-05 0.0098 18.6 1.0 1 23 386 409 386 409 0.97 9 13 0.0022 0.4 13.6 1.9 1 23 415 438 415 438 0.96 10 13 0.02 3.7 10.5 2.9 1 23 444 466 444 466 0.98 11 13 0.00045 0.083 15.7 0.5 1 23 472 495 472 495 0.97 12 13 0.00019 0.035 16.9 0.8 1 23 501 524 501 524 0.97 13 13 0.00019 0.034 16.9 1.5 1 23 530 553 530 553 0.97
Sequence Information
- Coding Sequence
- ATGTTATATGATAGCGTTGATTCTAAGGAACATTCACTACACAGAATTGAAATCAAAGGAGATGAAGTCCCAGGTTGTGAATACAGTAAGAAATGTAAGGACATTCCTTCTCTGGATTTGGATGTCGTTTGTAAAGTGAAAAAAGAGGAACCTGAAGAGCAGCATTTAAATGTTTCACAGTTTCTCATAGGTGAAGATCATTACAAAACTAAATCTGAGAATCTAGTGGACCATGACACAAGTGTAGGACTTGTTAATGTCAAAACAGAATCAAAGGTAGGAAGCTTTGGAACTGGTAAATGTTTTGACAATACCTTTGAGATTTTTAAAGATGCAGTTAAAATGGAAATTAGCGAAAGTGTTGTTATAAAAGTGGAAAGCAATATTGGCGATGAAATGTTAGAAGATAGTTCATCCATGAGCTTCGTCAACATTGGAGAATATTGTGTTTTGAATGAAGAAAATGGAGGGATAGTGAAACACAACAAGATAACTGGTATCCATCCTGAATATCAGATTTCACATAATATCGAAGGAAATTGTGGACTATTTTACTGCACATATTGTCATTATAAAAGTAAATATAagtgttcagttgtgcaacatatCAAGGCAATTCATATGAAAATTAGGGCGCACAAGTGTGagtcatgtgattacagtactgctcTTAGACATAACTTACTACAACACATTAAGTCAAAGCACACCAAGGAGAAGCCATTTAAATGTAAATTATGCAACTATATTAGTTCTCGGAAAGAAAGCCTACAGTTACACTTAGCATCGAAACATAATAATGAAAAGCCATATAAGTGCAAGTCTTGTGACTATGGTGCTGTCCAGAGATCTCACTTATCAAGGCACATTATGTCAAAGCACATTGCAGATAAACCTTTTAAATGTCAGTCttgtgattacagtactgtctTTAGAGGTAATTTACAACAACACATCACTTCAAAGCACACAGTAGATAAGCCATACAGATGTGACACATGTAGTTTCGGTACTGCGTATAAAAGTAACATATTACAGCATATGTTGAACCATGTTAAGGGAAAACTGTTCAGATGTAACTTATGCGACTATATAACTCCACAAAGGAGACACTTGAGGATGCACATGACATCAAAGCATAGTGAAGTAAAGCCTTACAAATGTGAATcgtgtgattacagtactgctcGCAAAGAAAACTTACTGAGACATGTGAATTCAAAGCACGCCATGGAGAAACAGtttaaatgtgaattatgtgactATACGAGTGCTCGAAAGGAATGCTTACAGTTACACTTAGCCTCAAAACATAGAAACGAAAAGTCATACAAGTGTGAATCGTGTGAGTATAAGACTGTCCGTCGATGTGATTTATTAAAACATATTGtgaagcatactgcagaaaaaccTTTTGAATGTGGGTCTTGTGGTTACACTACTGGCCGCAGAAGTAACTTAGTACAACATGTAAAGTCAAAGCATACTGATGAAAAACcgtttaaatgtgagttgtgtgattacacgaCTGTTCGAAAAATCTATTTGCAAGAACACATAATGTCAAAAcatagtgaagaaagaccttacaGGTGTGAGGTATGTGATTACGGTACTGTTCGTAAAAATAATTTACTACACCACATAAAGTTAAGACATACTGTAAAACAAAGGTTTAAACTCGAGTCATGTAGTTGA
- Protein Sequence
- MLYDSVDSKEHSLHRIEIKGDEVPGCEYSKKCKDIPSLDLDVVCKVKKEEPEEQHLNVSQFLIGEDHYKTKSENLVDHDTSVGLVNVKTESKVGSFGTGKCFDNTFEIFKDAVKMEISESVVIKVESNIGDEMLEDSSSMSFVNIGEYCVLNEENGGIVKHNKITGIHPEYQISHNIEGNCGLFYCTYCHYKSKYKCSVVQHIKAIHMKIRAHKCESCDYSTALRHNLLQHIKSKHTKEKPFKCKLCNYISSRKESLQLHLASKHNNEKPYKCKSCDYGAVQRSHLSRHIMSKHIADKPFKCQSCDYSTVFRGNLQQHITSKHTVDKPYRCDTCSFGTAYKSNILQHMLNHVKGKLFRCNLCDYITPQRRHLRMHMTSKHSEVKPYKCESCDYSTARKENLLRHVNSKHAMEKQFKCELCDYTSARKECLQLHLASKHRNEKSYKCESCEYKTVRRCDLLKHIVKHTAEKPFECGSCGYTTGRRSNLVQHVKSKHTDEKPFKCELCDYTTVRKIYLQEHIMSKHSEERPYRCEVCDYGTVRKNNLLHHIKLRHTVKQRFKLESCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -