Telo048708.1
Basic Information
- Insect
- Tillus elongatus
- Gene Symbol
- -
- Assembly
- GCA_964006375.1
- Location
- OZ023266.1:6166316-6171152[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00043 0.078 15.8 2.5 3 19 132 148 131 154 0.92 2 11 0.9 1.6e+02 5.3 0.9 3 23 162 179 161 179 0.88 3 11 2e-06 0.00038 23.1 1.7 1 23 185 207 185 207 0.99 4 11 0.031 5.6 9.9 5.3 1 21 213 233 213 235 0.94 5 11 0.0001 0.019 17.7 2.5 1 23 241 263 241 263 0.98 6 11 1.4e-05 0.0025 20.5 3.9 1 23 275 297 275 297 0.98 7 11 3.4e-06 0.00062 22.4 1.5 1 23 302 324 302 324 0.95 8 11 0.00032 0.059 16.2 4.0 1 23 330 352 330 352 0.96 9 11 6.2e-05 0.011 18.4 10.0 1 23 358 380 358 380 0.98 10 11 1.4e-06 0.00025 23.6 0.5 1 23 386 408 386 408 0.99 11 11 0.007 1.3 12.0 2.6 1 20 413 432 413 433 0.96
Sequence Information
- Coding Sequence
- ATGGTTGAATTTAACGAACATTATAATAGTTTGATATTTCAGGTAACTCTGGATGATAGTTTACCACAAAACATATGTGATATATGTTTAAATAGCCTGACTACATTTATTAAATTCAGAACAAACTGTTTTGATTCAGAAAATAAACTGAAACAAATGATATTGGAAGAAGAGAAGAAAATAGAAGGCAAACGTAAGATAAAATTAGTCATATCAGATGTATCAGATGAAGAGTCATACTCTGAGCTTCCATATAAAGAAGAGCCAGATTCTGATAGTTCATCAAATGATTACATAAGAACTTcaagaggaagaagaagaaaaccAAACACGGCTAAACGTAAAATGGAAACTCGTAATGCTAAAAGTGAAGTATTGTCAAAGCCAGAGTTGTGTAAAGACTGTGGGGAGACGTTTACATCAAGAGTGGAATTAAAGAAACATTGCAGGCAGTTTGGACATAAGAAAGACCGCAGTGAATTATGCGAAGTGTGCAACAAAAAGGTGACTCAACTCAAAGCCCACATGTTATCGCACACTAAAGAGAAGCCATTTAAATGCACTATTTGTGACGAAAGGTTTGTCGCCAAGTATAATATGAAAAGACACATGATGCGTCATACAGGAGAGAGACCTCATGTCTGCGAAACGTGTGGAACAGGTTTCATTCAAAGTTGTCAGCTGACAGAACACAAGAGATGTCACACTGGAGAGCAACCATTTATCTGTGATTACTGCGGTGAAAAATTTTCCACCACCAACCGCTACAAATCTCATCTACGGAAGCACCTATCAGCGCAGGGGAAACTACCCAATGAGAAGTTTTCTTGTGACATCTGCCACAAGGAGCTGTCCTCCAAGGGCAACCTCAAACATCACTTGATGACCCACGGTGAAAAGAGCTTCTTGTGTAGTGAGTGTGGCAAGAGCTTTTCCACCAAGGAAAGCTTGGACACACACTTCAGGTCCCACACAGGCGAAAGACCTTTCGCCTGCTCCTTCTGTGATAAAACCTTCTCCCATAGGACCAGCTGGCGGTACCACCAGATGCTTCATAATGGTCTCAAGCCACATGTGTGTCATATCTGCTCAAAAGGGTTCTCACAGAAACATCATCTTCGATATCACATTAGAAAACACAATGGGGAGAAGCCTTATGTGTGTTCCTTATGCGGAAAGGCCTTTATATATGATGACAGTCTAAAGAAACATTTAAAAACACACACCGGAGAAGGATACACATGTAATTTGTGCCACGGACAGTTTTGTAATGCTAGTGgcttaaaaaaacacaaagcGGCTTGTAAGATCAATAATAATTAA
- Protein Sequence
- MVEFNEHYNSLIFQVTLDDSLPQNICDICLNSLTTFIKFRTNCFDSENKLKQMILEEEKKIEGKRKIKLVISDVSDEESYSELPYKEEPDSDSSSNDYIRTSRGRRRKPNTAKRKMETRNAKSEVLSKPELCKDCGETFTSRVELKKHCRQFGHKKDRSELCEVCNKKVTQLKAHMLSHTKEKPFKCTICDERFVAKYNMKRHMMRHTGERPHVCETCGTGFIQSCQLTEHKRCHTGEQPFICDYCGEKFSTTNRYKSHLRKHLSAQGKLPNEKFSCDICHKELSSKGNLKHHLMTHGEKSFLCSECGKSFSTKESLDTHFRSHTGERPFACSFCDKTFSHRTSWRYHQMLHNGLKPHVCHICSKGFSQKHHLRYHIRKHNGEKPYVCSLCGKAFIYDDSLKKHLKTHTGEGYTCNLCHGQFCNASGLKKHKAACKINNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -