Telo000569.1
Basic Information
- Insect
- Tillus elongatus
- Gene Symbol
- -
- Assembly
- GCA_964006375.1
- Location
- OZ023262.1:7730902-7733895[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.0023 0.43 13.5 2.7 1 23 163 186 163 186 0.97 2 29 0.31 57 6.8 1.9 1 23 192 215 192 215 0.97 3 29 0.36 66 6.6 4.1 1 23 221 244 221 244 0.93 4 29 0.047 8.6 9.4 0.3 1 23 250 273 250 273 0.95 5 29 0.0024 0.44 13.4 0.2 1 23 279 302 279 302 0.97 6 29 0.13 25 7.9 1.5 1 23 308 331 308 331 0.97 7 29 0.022 4.1 10.4 0.3 1 23 337 360 337 360 0.93 8 29 2 3.6e+02 4.3 0.6 1 16 366 381 366 388 0.81 9 29 0.0013 0.24 14.3 1.0 1 23 394 417 394 417 0.98 10 29 9 1.7e+03 2.2 3.3 1 23 423 446 423 446 0.94 11 29 0.0021 0.38 13.6 0.9 1 23 452 475 452 475 0.96 12 29 0.015 2.7 11.0 0.8 1 23 481 504 481 504 0.95 13 29 4.1 7.5e+02 3.3 0.0 6 23 515 533 513 533 0.86 14 29 0.025 4.5 10.2 3.9 1 23 539 562 539 562 0.95 15 29 2.5 4.7e+02 3.9 1.6 1 23 568 591 568 591 0.85 16 29 0.087 16 8.5 0.6 1 23 597 620 597 620 0.95 17 29 0.86 1.6e+02 5.4 4.2 1 23 626 649 626 649 0.98 18 29 0.14 25 7.9 5.1 1 23 655 678 655 678 0.94 19 29 0.00025 0.046 16.5 3.3 1 23 684 707 684 707 0.95 20 29 0.00029 0.053 16.3 1.9 1 23 713 736 713 736 0.96 21 29 0.0047 0.86 12.5 1.6 1 23 742 765 742 765 0.92 22 29 0.017 3 10.8 2.5 1 23 771 794 771 794 0.97 23 29 0.0011 0.21 14.4 2.9 1 23 800 823 800 823 0.98 24 29 0.027 4.9 10.1 3.8 1 23 829 852 829 852 0.96 25 29 0.00075 0.14 15.0 1.8 1 23 858 881 858 881 0.98 26 29 0.0064 1.2 12.1 0.6 1 23 887 910 887 910 0.98 27 29 1.1e-05 0.0021 20.7 0.7 1 23 916 939 916 939 0.98 28 29 0.0079 1.5 11.8 0.9 1 23 945 968 945 968 0.97 29 29 0.047 8.7 9.4 3.1 2 23 975 997 974 997 0.96
Sequence Information
- Coding Sequence
- aTGAGTGTAATCAAAGAGAGCCAGGTTTGTGATTGCAACTGTAAAACAGTTCACATAGGTGAATGTGAGTGTAGCGATAACATTTTCGTAGATGGGTTTGATACCAAAGAGGAACATTTAGTGCTTGAACGAGAACAAAACTCTGAGCACCAATGGAGAGGAAGAGTGGAAATTAAACATAACACAGAATATACACCTATTACTGTTAAGTTGGAGAAGATCGAAGGTCAGTTTGTAGATGACCCAAAACATGACTTCAAAGGTGAAGTGAGCCACGAGGGATCTGGTGGTTTTGAAGCTGTTACAGGTGGACAGGTAgttgatgaaaatgtttttattaaaggTGGAGTGATTATAgaagattttaaaattgaaacatttgATCATGGCTGCACAGGTCCGAGTAATAATGACTCTGTCGATCTGAAGAATGTACTAGTGAAAAATGAAGTAGGTACAAAATCAAAACACAATGCAAAAAATTCTTACTTTTGCAACACCTGCGATTACAAAACCGTTTCGAAACGCACCTTATCAAACCACATAAGGTCAAAACATACTGGGGAAAAACCTTTTAGATGTTATCAGTGTGACTTTAGTGCATGTGTTAAGTATTCTCTAGTAGGCCATATAATGTCAAAACATACTAAAACGAGACCGTTTAAATGTTTTCAGTGTGATTTTTGTACTGTTAATAAACGGCGTTTAACACAACACACAATTGCAAGTCACAGTGAAGAAatgccttataaatgtgataacTGTGACTTCAGTACTGCACTTAAGTATTCCTTAGGACTTCATATAATGGCAAAACATACTGGagaaagaccatttaaatgtggtAAATGTGGTTATGGTGCTGTTAGGAAGTCTGTGTTAACACAACACATACTGGTAAAGCACACTAAAGAAATGCCTTATAATTGTGATAAATGTGACTTTAGTACCGCACTTAGGTGTTCTTTAGCACTTCATATAATGTCGAAACATACTGGAataagaccatttaaatgtggtcaatgtgattatagtgctGTTACTAAGTCTTATGTAACACAACACGTCCTggcaagacacactgaagaaaagccctataaatgtgataaatgtgactttagtactgcACTTAAGCATTCATTACCAGGTCATAGTGCAATACATACTGAAGAAAGGCCATTTAAGTGCGGTGAATGTGATTATAGTGCTGTTAAAAAGGTTCAGTTAACACGGCACTTCATGACAAAACACACTGAAGAAAAACCTTATAATTGTTATAAATGTGACTTTGGTACTACACTCAAGCATTGTTTAGTAGGTCATATCATGGCAAAACATACCGATcaaagaccatttaaatgtggtcagtgtgatcATAGTGCTGTTAAAAAGGGTGACTTAACAAGGCACATACAGGCAAAACACACTGGGGAAAGACCCTATAAATGTGATATATGTGACTTTAGTACTGCACATAGGAGTTCTTTACCAGGTCATATAATGTCAAAACATACTGGACTAAGACCATTTAAATATGGTCAATGTTCTTTTGCTGGTGTTCAAAAGTATGAGTTAGCGAGACACATACAGGCAAAACACACCAAAGAAAAGCGTTTTAAATGTGATAAATGTGATTTTTGTACTTTTGGCAAGCGGCAGTtaacaaaacacataattttaagtcacagtgaagaaaggccttatagatgtgataaatgtgattttggtactataaataaacaatatttagcATGTCATGTAATGGCAAAACATACTGAAAACAGACCATTTAAATGTAGTCAGTGTGATTATGGTAGTGTTATAAAGTTTCAGTTATCACAGCACATACAGGCAAAACACACTGAAGAAAAGCGTTATAAATGTGATGAATGTCACTTTAGTACTGGACTCGAGCATTCTTTAGTGTATCATAGAATGACTAAACATACTGAAAGcagaccatttaaatgtggtcagtgtgattacACGTGTGTTAGCAAGTGTcgtttaacacaacacataacagcaagacacactgaagaaagaccttataaatgtgatcagtgtgattataggtGTGTTAGAAAGTCTCAGTTGACACAACACGTAACAATAAGGCACTCTAAAATgaggccttataaatgtggtcagtgtgatcATAGTACTACTAGACAGGCTTACTTAACACAACACATACAAGCAAAACACACTGAAGAAAAGCCTTAtgaatgtgatcagtgtgattattgtgctgTTACAAAATATCAGTTAACACAACACGTAACAGCAAAACACAGTGTAATAAGGCCTTATAGATGTGACCAATGTGACTATAGTACTGCATTTAGGAATTGTTTATCACAACATATAATGGTGAAACATAGTGAAGAAAGGCCGTTTAAATGTGGTCACTGTGATTATGGTACTATTAACAGGTTTCaattaacacaacacataaaatcaagacacagtgaagaaaagcCTCATAAATGCCGtgagtgtgattatagtactatTACGAAGACTCGCTTAACACAGCACACGCAGGTGAAACACACTGGAGAAAGGCCTTATAAGTGTAATAAATGTGACTATAGTACTGCCCGTATGCATTCTTTAGCAGATCACATAATGTCAAAACATACTGGAGAAAGACCATATAAATgtggtcaatgtgattatagtgctGTTATCAAGTCTCGGTTAACACGACATATAACAACAAATCACTCTGAAGAAAaaccatataaatgtgatcaatgtgattaTGGTAGTGTTAGAAAGTCCCAGTTAATACGACACATACAGACAAATCACACTGAAggaaggccttataaatgtgataaaTGTAGCTATAGTGCTGCTTTTAAGAATTATTTATCGCAACATATAAGGCTGATACATATTGGAAGAAGGCGTGTAAAATGTGACCTGTGTGATTATTCTGCTACCAGAAAGTGTTATTTAATACAACACAAAAACAAGAAACACTGA
- Protein Sequence
- MSVIKESQVCDCNCKTVHIGECECSDNIFVDGFDTKEEHLVLEREQNSEHQWRGRVEIKHNTEYTPITVKLEKIEGQFVDDPKHDFKGEVSHEGSGGFEAVTGGQVVDENVFIKGGVIIEDFKIETFDHGCTGPSNNDSVDLKNVLVKNEVGTKSKHNAKNSYFCNTCDYKTVSKRTLSNHIRSKHTGEKPFRCYQCDFSACVKYSLVGHIMSKHTKTRPFKCFQCDFCTVNKRRLTQHTIASHSEEMPYKCDNCDFSTALKYSLGLHIMAKHTGERPFKCGKCGYGAVRKSVLTQHILVKHTKEMPYNCDKCDFSTALRCSLALHIMSKHTGIRPFKCGQCDYSAVTKSYVTQHVLARHTEEKPYKCDKCDFSTALKHSLPGHSAIHTEERPFKCGECDYSAVKKVQLTRHFMTKHTEEKPYNCYKCDFGTTLKHCLVGHIMAKHTDQRPFKCGQCDHSAVKKGDLTRHIQAKHTGERPYKCDICDFSTAHRSSLPGHIMSKHTGLRPFKYGQCSFAGVQKYELARHIQAKHTKEKRFKCDKCDFCTFGKRQLTKHIILSHSEERPYRCDKCDFGTINKQYLACHVMAKHTENRPFKCSQCDYGSVIKFQLSQHIQAKHTEEKRYKCDECHFSTGLEHSLVYHRMTKHTESRPFKCGQCDYTCVSKCRLTQHITARHTEERPYKCDQCDYRCVRKSQLTQHVTIRHSKMRPYKCGQCDHSTTRQAYLTQHIQAKHTEEKPYECDQCDYCAVTKYQLTQHVTAKHSVIRPYRCDQCDYSTAFRNCLSQHIMVKHSEERPFKCGHCDYGTINRFQLTQHIKSRHSEEKPHKCRECDYSTITKTRLTQHTQVKHTGERPYKCNKCDYSTARMHSLADHIMSKHTGERPYKCGQCDYSAVIKSRLTRHITTNHSEEKPYKCDQCDYGSVRKSQLIRHIQTNHTEGRPYKCDKCSYSAAFKNYLSQHIRLIHIGRRRVKCDLCDYSATRKCYLIQHKNKKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01443008;
- 90% Identity
- iTF_01443008;
- 80% Identity
- -