Telo065358.1
Basic Information
- Insect
- Tillus elongatus
- Gene Symbol
- -
- Assembly
- GCA_964006375.1
- Location
- OZ023268.1:6548781-6551024[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00079 0.14 14.9 1.0 1 23 169 192 169 192 0.98 2 19 2.8e-05 0.0051 19.5 0.7 2 23 199 221 198 221 0.96 3 19 0.00036 0.066 16.0 3.6 1 23 227 250 227 250 0.95 4 19 0.0013 0.24 14.3 0.4 1 23 256 279 256 279 0.94 5 19 0.0012 0.22 14.4 4.4 1 23 281 303 281 303 0.98 6 19 4.9e-05 0.0091 18.7 3.1 1 23 335 358 335 358 0.97 7 19 0.0015 0.27 14.1 4.1 1 23 364 387 364 387 0.96 8 19 0.00013 0.025 17.4 0.6 1 23 393 416 393 416 0.97 9 19 0.012 2.3 11.2 6.0 1 23 422 445 422 445 0.95 10 19 0.0021 0.39 13.6 2.2 1 23 451 474 451 474 0.97 11 19 0.0018 0.33 13.8 1.5 1 23 480 503 480 503 0.97 12 19 0.00088 0.16 14.8 0.7 1 23 516 539 516 539 0.97 13 19 0.00098 0.18 14.6 3.0 1 23 545 568 545 568 0.97 14 19 0.016 3 10.8 0.4 1 23 574 597 574 597 0.93 15 19 0.0023 0.42 13.5 3.6 1 23 603 626 603 626 0.96 16 19 0.066 12 8.9 1.5 1 23 632 655 632 655 0.95 17 19 0.0024 0.45 13.4 4.0 1 23 661 684 661 684 0.96 18 19 0.12 22 8.1 1.4 1 23 690 713 690 713 0.95 19 19 0.011 2 11.4 3.0 1 23 719 742 719 742 0.98
Sequence Information
- Coding Sequence
- ATGAGTGCGCTAGAAGAAATCATGATGTGTGATTGTGAAACAAATCACAGAATTGATTGCCAGTACAAGGATGACATTTTCTTAGATGGCTTTGATATTAAACCAGGTTTGGTGATTAAACAAGAAAACTTTGAAACCGACAACACTGAGCACAAAGTGGAGAAGATTGAAGCAGAGTGTTCAGAAGAATCAAAACATGACCTCAGAGGTGATTTGAGTTGGGAGAGATCTGATGATTTAGAAGCTGTTGGGGATGGAAAAATAATCGATGTAAAAAGTGAAAGTGTGTGCGCTAAAACTGAAACACTtatagattttaaaattgaaagATTAGATTATGGCTGCCCAGGTGTCAATAATCATGACAGTGTGGATGTCAAAGTACCAGTGAAAATTGAAGAAGGCCCAAAATTAAAACACAGTGCAAAAAAATGTGATTCTAGAACTTTCAAAAAAAGAACTTTTTCACAGCATGCAATggcaagacacactgaagaaagaccctttaaatgtgatcagtgtgacttCAGTACTGTCAGCAAGTATGCTGTATCAAGACATATAATGACCAGACACACTGAAGAAAACCTTTTAAAGTGTAACCAATGTGATTATTCAACTGTTGAAAAGTCTAACTTAACACGGCATATAATGGTAAAACACAGTAAAGAAAAACCTTTTAAGTGTGACcaatgtgattattgtactgttcaAAGGTTTAACTTAACACGACATTTAATGGCAAAGCACAGTGAAGAAAGgcattttaaatgtgatcagtgtgactaTAGTGCTGCCGTTAAGAGTTACTTAACAAAACACTTAATTGCGAGACAcacttttaaatgtgatcagtgtgactttGGTACTGCTCACAAACATAACCTATTGCAACACATGTTGAAACACACCagagaaaagccttataaatGCGGCCAAAGTAATTTCCATACTGCCAGTTTAACACAACACACAATGGtgagacacagtgaagaaaggcgCTTTAAATGCAATCACTGTGATTATAGTGTTGCGCATAAAAGTGATTTATCACAACATATAATGGTAAAACACTCCCATGAGAGGCCTTTTAAATGCGATCAGTGTGATTTTAATACTACCAGGAAGTCTTGTTTAAAACAACATATAATGGGAAGgcacagtgaagaaaggccttttaaatgcaatcagtgtgattatagtgctGCTCGTAATAGTTATTTATCACAACATATAATGGTAAAACATACTCatgaaaggccttttaaatgcgGTCAATGTGATTTCCATACTACCAGAAAGCATTATTTAACACGACACACGATGGCAAGCCACAGTGAAGAAAGGCCCTTTAAATGCAGCCAATGTGATTTTAGTAGTGCTCATAAAAGATATTTATCACAGCATATAATGGTAGAACACACTGatgaaaggccttttaaatgtgatcgaTGTGACTTTAGCACTGGCTTTAAGAGTTACTTAACAAAACACATAATTGTGAGGCACCCTGGGGCAAGTGTGAGACACATTCGGGAAAGGTCTTTTAAATGCAATAACTGTGACTTTACTGCTGCCTCTGAGAGTCACTTAACAGAACACATAATTGTGAAACACGCTGAGGAAAGGCCTTTCAAGTGTGATCACTGTGATTTTAGCGCTGCCCATCAAAGTTATTTATCACAACATATAATGGTAAAACACAGTGAAGACAGGCCTTTTAATTGTGACCAATGTGATTATTTTATTGTTGGAAGGTCTAACTTAATACGACATAAAATGGCAAAACACACTGAGAAGACGTCTTTTAAGTGTGATCAATGTGATTTTCATACTGTTCAAAGGTCTCACTTAACGCTACATATAAATGCACAACACACCGAAGAGGGGCCTTTTAAGTGTGATAGATGTGATTTTCATACCGATACTTGGACTCGGTTATCACAACATATAATGGCATTGCACACTGAAGAAAGGACTTTTAAGTGTGATCAATGCGATTTTCATACTGTTCAAAGGTCTCACTTAACGCTACATATAAAGGCACAACACGCTGAAGAGAGGCCTTTTAAGTGTGGTCGATGTGATTTTCATACCGATACATGGACTCGGTTATCACAACATATAATGGCAATGCACACCAAGGAAATGGCTTTTAAATGTGACCAATGTGACTATTGTGCTTTTGGAAGGTCTGGCTTAGAATATCACATGAGGAAGAAGCACACTGAAGAAACTTTTTAA
- Protein Sequence
- MSALEEIMMCDCETNHRIDCQYKDDIFLDGFDIKPGLVIKQENFETDNTEHKVEKIEAECSEESKHDLRGDLSWERSDDLEAVGDGKIIDVKSESVCAKTETLIDFKIERLDYGCPGVNNHDSVDVKVPVKIEEGPKLKHSAKKCDSRTFKKRTFSQHAMARHTEERPFKCDQCDFSTVSKYAVSRHIMTRHTEENLLKCNQCDYSTVEKSNLTRHIMVKHSKEKPFKCDQCDYCTVQRFNLTRHLMAKHSEERHFKCDQCDYSAAVKSYLTKHLIARHTFKCDQCDFGTAHKHNLLQHMLKHTREKPYKCGQSNFHTASLTQHTMVRHSEERRFKCNHCDYSVAHKSDLSQHIMVKHSHERPFKCDQCDFNTTRKSCLKQHIMGRHSEERPFKCNQCDYSAARNSYLSQHIMVKHTHERPFKCGQCDFHTTRKHYLTRHTMASHSEERPFKCSQCDFSSAHKRYLSQHIMVEHTDERPFKCDRCDFSTGFKSYLTKHIIVRHPGASVRHIRERSFKCNNCDFTAASESHLTEHIIVKHAEERPFKCDHCDFSAAHQSYLSQHIMVKHSEDRPFNCDQCDYFIVGRSNLIRHKMAKHTEKTSFKCDQCDFHTVQRSHLTLHINAQHTEEGPFKCDRCDFHTDTWTRLSQHIMALHTEERTFKCDQCDFHTVQRSHLTLHIKAQHAEERPFKCGRCDFHTDTWTRLSQHIMAMHTKEMAFKCDQCDYCAFGRSGLEYHMRKKHTEETF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -