Telo000453.1
Basic Information
- Insect
- Tillus elongatus
- Gene Symbol
- -
- Assembly
- GCA_964006375.1
- Location
- OZ023262.1:5729651-5731843[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.039 7.2 9.6 3.5 1 23 187 210 187 210 0.96 2 19 0.0022 0.41 13.5 0.3 1 23 216 239 216 239 0.94 3 19 0.072 13 8.8 1.9 1 23 245 268 245 268 0.95 4 19 0.00018 0.033 17.0 0.4 1 23 274 297 274 297 0.94 5 19 0.024 4.5 10.3 3.4 1 23 303 326 303 326 0.97 6 19 8.9e-05 0.016 17.9 0.8 1 23 332 354 332 354 0.98 7 19 0.0065 1.2 12.1 2.4 1 23 360 383 360 383 0.97 8 19 2.8e-05 0.0051 19.5 0.8 1 23 389 412 389 412 0.98 9 19 0.0089 1.6 11.6 1.1 1 23 418 441 418 441 0.96 10 19 6e-06 0.0011 21.6 0.9 1 23 447 470 447 470 0.98 11 19 0.00015 0.027 17.2 1.7 1 23 476 499 476 499 0.98 12 19 0.031 5.6 9.9 5.5 1 23 505 528 505 528 0.97 13 19 4.5e-05 0.0083 18.9 0.9 1 23 534 556 534 556 0.98 14 19 0.0014 0.26 14.2 1.0 1 23 562 585 562 585 0.97 15 19 0.00015 0.027 17.2 0.8 1 23 591 613 591 613 0.98 16 19 0.0065 1.2 12.1 2.7 1 23 619 642 619 642 0.97 17 19 0.00092 0.17 14.7 2.9 1 23 648 671 648 671 0.96 18 19 0.00064 0.12 15.2 1.0 1 23 677 700 677 700 0.96 19 19 0.00016 0.029 17.1 0.8 1 21 706 726 706 730 0.93
Sequence Information
- Coding Sequence
- ATGAGTGTGAACAAACAGAGCCAGCTTTGTGATTGCAACTGTAAAACAGCTCATGGAAGTGAGTGTGAATATAGCGATGATATTTTCGTAGATGGATTTGATAGTGGAGAGGCAGAATCTTTAGTGATTAAACAGGATCAAAACTCTGAGCACCAGTGGAGAGGGAGAGTGGAAATTAAACACAACACAGAATATACGCCTATTACTGTTAAATTGGAGAAGATTGAAGGACAGTGTTTAGATGAACCAAAACATTACATAGGTGAGGTGGACCATGAGAGAACTGAGGGTTCTAAAGTTGTTACAGGTGGACAGATAGTTAATGAAAAACATGATAATAAAAGTGAAGTGATTATAgaagattttaaaattgaaatattgGATCATGGCTGTACACGCCACAGTAATAATGACCTTGACGATCTGAAGGATGTATTAGTGAAAAATGAAGTAGGTACGATGACGGAACGTTTTAATTCTTATGAGTGTAATTATCCTACAGTCAGAAAGTTTTCTTTAACAGAACGCATAATATATGAACATAATGAAAAAGGACCTtttaaatgtggtcagtgtgattataaTACAGCCCATAAGATATGTTTATCACGGCACATAATGGCAAAACATAGTGAAAAAGGACCCTTTAAATGTGCATATTGTGATTATGGTGCTATTGTAAAGTCTCAGTTAAGACGacacataacagcaagacacagtgaagaaaagcgttataaatgtgatcaatgtgagtTTAGTACTGCCAATAAGCATTATATTTCACAACACATAATGGCAAAACATAGTGAAAAGCGACCTTTTAAATGTGCTCAGTGTGACTATAGTACTGTTGTTAAGTCTCAGTTAAGACGACACATAATAGCAAGACACATTGAAGAAAGACGTTATAAATGTAGTCAGTGTGATTATACTACAGCTTATAAGACATGTTTATCACTACACGTAATGATGAAAcatagtgaagaaagaccttttaaatgtgatcagtgtgattatagtactgttggaaAGTCTCAGTTAGAACGACACAGAGccagacacagtgaagaaagaccttataaatgtggtcagtgtgactTTAGTACAGCACATAAGAGATATTTATCACAACACGTAATGGTCAAAcatagtgaagaaagaccttttaaatgtgatcagtgtgattatagtactgttggaaAGTCTCAGTTAGTACAACACATAAGAACAAGGCACAGTGAAGAAATATCTTATAAATGTGGTCATTGTGATTATAGTACTCCCTATGCAACACGTTTATCACAACACATAATGGCAAAACATAGTGGAAAacgaccttttaaatgtgatcagtgtgattatagtaccgTTGGAAAGTCTCAGTTAATACGACATATAAGaacaagacacagtgaagaaacaccttttaaatgtgataagtgtgattatagtactccTGGAAGGTTTAATTTAAGACGACACATAACAACAAGACACACCGAAGAAAGACCatataaatgtggtcagtgtgactATAGTACTGCCCATAAGACATGTTTATCACAACACACAATGATGAAAcatagtgaagaaagaccttttaaatgtgatcagtgtgattatggtACTGTTAGAAAGTCTCAGTTAATACGACATAGAGCAAGACACAGTGATGAAAGACgttataaatgtggtcagtgtgaccATAGTACAGCCCGTAAGACAGGCTTATCACTACACATAATGGTGAAACATAGtaaagaaagaccttttaaatgtgatcagtgtgattatagtactgttgtaAAGTCTCAGTTAGTACGACACAGAGCACGACACAGTGACGAAAGACCatataaatgtggtcagtgtgactTTAGTACAGCCCATAAGAGATATTTATCACAACACGTAATGATGAGACATAgcgaagaaagaccttttaaatgtgatcagtgtgattattgtactgttgtaAAGTCTCAGTTAATGCAACACACAAGAGggagacacagtgaagaaagaccttataaatgtggtcattgtgattatagtactgcctATGCGACAGGTTTATCACGGCACATAAAGGCAAAACATAGTGAAAAACGACCTTATAAATgcgatcagtgtgattatagtactgttgtaAAGTCTCAGTTAAGACGACACATAACAggcaagacacactga
- Protein Sequence
- MSVNKQSQLCDCNCKTAHGSECEYSDDIFVDGFDSGEAESLVIKQDQNSEHQWRGRVEIKHNTEYTPITVKLEKIEGQCLDEPKHYIGEVDHERTEGSKVVTGGQIVNEKHDNKSEVIIEDFKIEILDHGCTRHSNNDLDDLKDVLVKNEVGTMTERFNSYECNYPTVRKFSLTERIIYEHNEKGPFKCGQCDYNTAHKICLSRHIMAKHSEKGPFKCAYCDYGAIVKSQLRRHITARHSEEKRYKCDQCEFSTANKHYISQHIMAKHSEKRPFKCAQCDYSTVVKSQLRRHIIARHIEERRYKCSQCDYTTAYKTCLSLHVMMKHSEERPFKCDQCDYSTVGKSQLERHRARHSEERPYKCGQCDFSTAHKRYLSQHVMVKHSEERPFKCDQCDYSTVGKSQLVQHIRTRHSEEISYKCGHCDYSTPYATRLSQHIMAKHSGKRPFKCDQCDYSTVGKSQLIRHIRTRHSEETPFKCDKCDYSTPGRFNLRRHITTRHTEERPYKCGQCDYSTAHKTCLSQHTMMKHSEERPFKCDQCDYGTVRKSQLIRHRARHSDERRYKCGQCDHSTARKTGLSLHIMVKHSKERPFKCDQCDYSTVVKSQLVRHRARHSDERPYKCGQCDFSTAHKRYLSQHVMMRHSEERPFKCDQCDYCTVVKSQLMQHTRGRHSEERPYKCGHCDYSTAYATGLSRHIKAKHSEKRPYKCDQCDYSTVVKSQLRRHITGKTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -