Telo000574.1
Basic Information
- Insect
- Tillus elongatus
- Gene Symbol
- -
- Assembly
- GCA_964006375.1
- Location
- OZ023262.1:7779581-7782511[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.4 73 6.4 1.2 5 23 88 107 87 107 0.93 2 31 0.29 53 6.9 1.3 1 23 113 136 113 136 0.95 3 31 0.0028 0.51 13.2 0.5 1 23 142 165 142 165 0.97 4 31 0.15 27 7.8 0.8 1 23 171 194 171 194 0.95 5 31 0.0028 0.51 13.2 0.5 1 23 200 223 200 223 0.97 6 31 0.15 27 7.8 0.8 1 23 229 252 229 252 0.95 7 31 0.0028 0.51 13.2 0.5 1 23 258 281 258 281 0.97 8 31 0.004 0.74 12.7 0.4 1 23 287 310 287 310 0.97 9 31 0.13 24 8.0 1.9 1 23 316 339 316 339 0.97 10 31 0.0014 0.26 14.2 1.3 1 23 345 367 345 367 0.98 11 31 0.013 2.4 11.1 0.6 1 23 373 396 373 396 0.94 12 31 8.8 1.6e+03 2.2 3.3 1 23 402 425 402 425 0.94 13 31 0.0014 0.26 14.2 2.1 1 23 431 454 431 454 0.96 14 31 0.14 25 7.9 1.4 1 23 460 483 460 483 0.95 15 31 0.0086 1.6 11.7 0.3 1 23 489 512 489 512 0.96 16 31 0.0043 0.79 12.6 5.3 1 23 518 541 518 541 0.97 17 31 3.1 5.7e+02 3.6 0.4 1 22 547 568 547 570 0.77 18 31 0.0013 0.24 14.2 1.0 1 23 576 599 576 599 0.96 19 31 0.0089 1.6 11.6 2.0 1 23 605 628 605 628 0.96 20 31 0.019 3.5 10.6 2.8 1 23 634 657 634 657 0.94 21 31 0.0016 0.3 14.0 3.4 1 23 663 686 663 686 0.94 22 31 0.00021 0.039 16.7 1.0 1 23 692 715 692 715 0.98 23 31 0.00017 0.031 17.0 1.0 1 23 721 744 721 744 0.97 24 31 0.026 4.8 10.2 0.9 1 23 750 773 750 773 0.97 25 31 0.002 0.36 13.7 1.3 1 23 779 802 779 802 0.96 26 31 0.0001 0.019 17.7 2.2 1 23 808 831 808 831 0.95 27 31 0.0002 0.036 16.9 1.8 1 23 837 860 837 860 0.96 28 31 1.9e-05 0.0034 20.1 1.4 1 23 866 889 866 889 0.98 29 31 0.00014 0.026 17.3 0.3 1 23 895 918 895 918 0.96 30 31 0.02 3.7 10.5 0.8 1 23 924 947 924 947 0.96 31 31 0.00048 0.089 15.6 3.6 1 23 953 976 953 976 0.97
Sequence Information
- Coding Sequence
- ATGGAAGATCAGTGTTTAGATGAACCAAAACCTGACCTAAGCCACGAGGGATCTGGTGGTTATGAAGCTGTTACAGATGGACAGGTAgttgatgaaaatgtttttattaaaggTGAAATGATTATAgaagattttaaaattgaaacgTTGGACCACGGCTGCACAGGTCTCAGCAATAATGATTTTGTCGATCTGAAGAATGTACTAGTGAAAAATGAACTGAGTACAAAATCAAAACACAATGCAAAAATTTCGTACAACACATGCGACTACAGAACTTTTTACAAACGCAACTTATCAAACCACATTAAGTCAAAACATACtagagaaaaaccttttaaatgttatCAGTGTGACTTTAGCACTGCACTTAAGCATACCTTAGGAGTTCATATAATGGCAAAACATACTGGagaaagaccatttaaatgtggtcAATGTGATTATGGTGCTGTTAAAAAGTCTATGTTAACACAACACATACAGTCAAGGCACACTGAAGAAATGCCTTATAATTGTGAtaaatgtgactttagtactgcACTTAAGCATACCTTAGGAGTTCATATAATGGCAAAACATACTGGagaaagaccatttaaatgtggtcAATGTGATTATGGTGCTGTTAAAAAGTCTATGTTAACACAACACATACAGTCAAGGCACACTGAAGAAATGCCTTATAATTGTGAtaaatgtgactttagtactgcACTTAAGCATACCTTAGGAGTTCATATAATGGCAAAACATACTGGAcaaagaccatttaaatgtggtcAATGTGATTATGGTGCTGTTAAAAAGTCTATGTTAACACAACACATACAGTCAAGGCACACTGAAGAAATGCCTTATAATTGTaataaatgtgactttagtactgcACTTAAGCCTTCTTTAGCACGTCATATAATGTCAAGACATACTAGAGAAAGACCATTCAAATGTGGTCAATGTGATTTTAGTGCTGTTACTAAGTGTGAGGTAACAACACACATCCTAAGAAAGCACACTGAAGAAAAGCCCTATAAATGTGAtaaatgtgactttagtactgcACTTAAGCATTCGTTAGCAGTTCATATGGCAAAACATAGTGAagaaagaccatttaaatgtggcCAATGTGATTATAGTGCCGTTAAGAAGTTTGAGTTAACACAGCACTTACTGGCAAAACACACTGAAGAAAAGCCATATAATTGTTATAAATGTGACTTTGGTACTACACTCAAGCATTGTTTAGTAGGTCATATAATGGCAAAACATACTAACataagaccatttaaatgtggtcagtgtgattatagtactgttaaCAAGTGTGACTTAACACAACACATACAGGCAAAGCACACTGAAGAAAAGCGTTATAAATGTGATAAATGCGACTTTAGTACTGCACATAGGAATTCTTTACCAGGTCATATAatgtcaaaacacacaggagaaagaccatttaaatgtgatcaatgttCTTTTGCTGGCGTTCAAAAGTATGAGTTAGTGCGACACATACAGGCAAAACACACCAAAGAAAAGCGTTTTAAATGCGATAAATGTGATTTTTGTACTTTTAGCAAGTGGCATTTAACAAAACACATAATTGTAAGTCACAGTGAAGAAGGGCTTTATAAATGTGATAAATGTGACTTTAGTGCTATACTTAAGCAATCTTTAGCATTTCATATAATGGGAAAACATACTGAAAACAGACCATTTAAATGTAGTGAGTGTGATTATGGTACTGTTAAGAAGTttcagttaacacaacacatcCAGGCAAGACACACTGTAGAAAAGCGTTATAAATGTGATGAATGTCACTTTAGTACAGCCGGCAAGCATTCATTAGCAAGTCATATAATGGCGAAACATACTGGAAACCGACCATTTAAATGTGTTCAGTGTGAATATATGTGTGTTAGCAAGAGTCGGTTAACAAaacacataacagcaagacacaCCAAAGAGAGGCCTTATAAATGTACTCAGTGTGATTATAGGTGTGTTAGAAAGAATCAGTTAACACTACACATAACAGGAAGACACACTGACataaggccttttaaatgtggtcagtgtgattatagtactgtcaGAAAGCCACAGTTAACATCACACATAACAACAAGACACGGTAACATaaagccttataaatgtgatcagtgtgattatatgTGTGTTGGACAATCTGCCCTAACACAACACATAAGAGCAAGACACACCAAAataaggccttataaatgtgagcaatgtgactttagtactgcATTTAGGAGTTATTTACCACAACATATAATGATGAAACATACTGGagaaagaccatttaaatgtggtcagtgtgattatggTACTGTTAAAAAGTatcagttaacacaacacataacatcaagacacagtgaagaaaaacCTCATAAATGcggtcagtgtgattatagtactgttaaCAAGTCTCTCTTAACGAAACACATGCAGGCAAAACATACTCAAGAAAGGCCTTATAAGTGTAATAAATGTGACTATAGTACTGTCCGTAAGCATTCTTTAGCAGATCACATAATGGCAAAACATACTGGAGAAAGACCGTTCAAATGTGATCAGTGCGATTATAGTACTGTTAACCAGTCTCAGTTAACACAACATATAACaacaagacacagtgaagaaagacaatataaatgtgatcagtgtgattatagtagtgtTGGAAAGTCCCAGTTAATACGGCACATACAGGCAAATCACACTGAAggaaggccttataaatgtgataaaTGTAGCTATAGTGctgcttttaagaaatatttatcaCAGCATATAATGGCGATGCATATTGGAAGAAGACGTTTTAAATGTGACCAGTGTGATTATTCTTCCACCAAAAAGTATTCATtaacaaaacacaaaaacaagATACACTGA
- Protein Sequence
- MEDQCLDEPKPDLSHEGSGGYEAVTDGQVVDENVFIKGEMIIEDFKIETLDHGCTGLSNNDFVDLKNVLVKNELSTKSKHNAKISYNTCDYRTFYKRNLSNHIKSKHTREKPFKCYQCDFSTALKHTLGVHIMAKHTGERPFKCGQCDYGAVKKSMLTQHIQSRHTEEMPYNCDKCDFSTALKHTLGVHIMAKHTGERPFKCGQCDYGAVKKSMLTQHIQSRHTEEMPYNCDKCDFSTALKHTLGVHIMAKHTGQRPFKCGQCDYGAVKKSMLTQHIQSRHTEEMPYNCNKCDFSTALKPSLARHIMSRHTRERPFKCGQCDFSAVTKCEVTTHILRKHTEEKPYKCDKCDFSTALKHSLAVHMAKHSEERPFKCGQCDYSAVKKFELTQHLLAKHTEEKPYNCYKCDFGTTLKHCLVGHIMAKHTNIRPFKCGQCDYSTVNKCDLTQHIQAKHTEEKRYKCDKCDFSTAHRNSLPGHIMSKHTGERPFKCDQCSFAGVQKYELVRHIQAKHTKEKRFKCDKCDFCTFSKWHLTKHIIVSHSEEGLYKCDKCDFSAILKQSLAFHIMGKHTENRPFKCSECDYGTVKKFQLTQHIQARHTVEKRYKCDECHFSTAGKHSLASHIMAKHTGNRPFKCVQCEYMCVSKSRLTKHITARHTKERPYKCTQCDYRCVRKNQLTLHITGRHTDIRPFKCGQCDYSTVRKPQLTSHITTRHGNIKPYKCDQCDYMCVGQSALTQHIRARHTKIRPYKCEQCDFSTAFRSYLPQHIMMKHTGERPFKCGQCDYGTVKKYQLTQHITSRHSEEKPHKCGQCDYSTVNKSLLTKHMQAKHTQERPYKCNKCDYSTVRKHSLADHIMAKHTGERPFKCDQCDYSTVNQSQLTQHITTRHSEERQYKCDQCDYSSVGKSQLIRHIQANHTEGRPYKCDKCSYSAAFKKYLSQHIMAMHIGRRRFKCDQCDYSSTKKYSLTKHKNKIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -