Basic Information

Gene Symbol
pol
Assembly
GCA_964006375.1
Location
OZ023268.1:43291046-43310560[-]

Transcription Factor Domain

TF Family
CG-1
Domain
CG-1 domain
PFAM
PF03859
TF Group
Unclassified Structure
Description
CG-1 domains are highly conserved domains of about 130 amino-acid residues containing a predicted bipartite NLS and named after a partial cDNA clone isolated from parsley encoding a sequence-specific DNA-binding protein [2]. CG-1 domains are associated with CAMTA proteins (for CAlModulin -binding Transcription Activator) that are transcription factors containing a calmodulin -binding domain and ankyrins (ANK) motifs [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.3 5.7e+04 -3.8 0.1 55 75 774 794 773 801 0.79
2 2 2.9e-11 7.1e-07 31.3 0.3 3 114 1277 1383 1276 1385 0.83

Sequence Information

Coding Sequence
ATGCAAAAGGTAGTTAGGATTCCTGTAAAGCAAAATCAGGGACTCGGAATTCTAAATCACGAAATTTTTGGTGATGGCACAGAAATGCCATTAGCACTTGTAAACGTTAAAAATAATTTGGCTGTAACCACAATCACAAACTCTAAAGATAATCCTGTTAAAGTAACATTTCATGAACCATTAGACATAGAGCCGATTAATTGCCTTGacatgaatttttatgaaaaaatggaAGTTGACATTATGTCTGAAGAACAAGATaatcttttaaaaaataatttaaaaaatataagattAGATCACTGTAATATAGAAGAGAAAAATGCTATTAGAAAATTATGTTACGAGTTTAGGGACATATTTCATTGTGAACAAATACCATTAACATTTACTAATCGAATTAGACATAAGATAAATCTAAAAGATGATACACCTATATTTACTAAAACTTATCGATATCCAGAAATTCATAGAAATGAAGTTCgacaacaaatttcaaaaatgttagatcAGGGAATTATTCAAAACTCAACATCCCCTTGGTCAAGTCCCATCTGGATCGTACCAAAGAAACTCGATTCCTCTGGTAAAAAGAAGTGGCGTATTGTGATAGATTATCGCAAATTAAATGAGCGAACTATTGACGACAGATATCCTTTACCCAATATTACAGAAATTTTAGACAAATTGGGCAAAAGCCAATATTTTACAACCCTAGATCTGGCAAGCGGTTATTATCAAATAGAAATGCACCCAGATGACATTCCAAAAACCGCGTTTCAAACTGAGCAAGGTCATTATGAATTTAAGAGGATGCCGATGGGCTTGAAGAGTTCTCCTTCCACATTTCAACGCGTAGTCGATAATATACTGAGAGGTTTACAAAATGAGATATGTCTAGTATATTTAGACGATATCGTAATATTTAGCACGTCCTTACAAGAACATCTCGATAGGTTAAGGAAAGTTTTTATACGGTTACGAGAGGCAAATTTTAAATTACAACTAGATAAGTCTGAATTTCTTAGGAAAGAGGTTCAATATCTTGGACACATAGTCACCCCATCCGGAGTCAAGCCGAATCCTGACAAGATATCAGCAATAAAGAGTTTTCCCTTACCAAAAACCCGAAAAGACATTAAATCGTTCCTAGGTTTAGTAGGATATTATAGGCGATTTAtaaaagactttgcaaaaataacaaagccaatgaCGGTTTGCTTAAAGAAAGACATGCAAATTAAACATACAGCAGAATTCATACAAGCTTTCGAACATTGTAAAAATTTACTTATTAATTCCCCTATACTTCAATATCCCGATTTTAATCAACCTTTTGTGCTTACAACAGATGCAAGTAATTACGCTCTAGGCGCAGTTTTATCTCAAGGAAATATCCCTAATGACAAACCTGTAGCTTTTGCTAGTAGAACTCTGAACGACAGTGAAACTAGATATTCTGTCATAGAAAAGGAACTGCTAGCTATTGTATGGGCATGTAAATATTTTCGACCGTATCTGTATGGTAGAAAGTTTAAAATTTATACCGATCATAGACCCCTTGTTTGGATCTTTAGTTTAAAAGAACCTAATAGCAAACTTTTACGGTGGCGTTTGAAGTTGGAAGAATTCGATTacgaaataatatataaaaagggTTCTCAAAATAAAAACGCAGAcgcattatcaagaataaatttAAATCCAATTGAAACTGAGAGTCTAATAAATAATCCTGGTGACATTAATCAAGATCTTTTAGAATTTTTCCCCGAATTAGTAGAAAATACTGCTAATTTTAACGAACCTCAACCCTCAACTTCTTATGCACATAGCGATAACAATATTGAAGGGATGCGACAAAGTTCAccaaaaataattattcaaaGTGATGTACAAGTAAGACCGCCTCATGATCAAAACGAAAGTAATACTCTTTCTACACCTCATTCCAGTAGCAATCAAACACTCAATAATGGTATTCCTATACTGGACGATATTGTCAATAACAAAAgaaatcaaattttaatagcaaaaaatCCTCACAATTTACTTGATGTCAGTCAAACTAGGTTAGATAACTTGACTATAACAAACGTAAAAATTCCTAAATCCAACGCAAAATTAAtaatagaatttttgaaaaaatatactgGTTCTAATAAAACCTATCATTTGTATTTTTATGACCAAACAATGTATTCGGAATTTAATAAAGTGTACATGAAACATTTTCAACACTCTAGTCTCAAGCTAGTTAAAtgtacaaaattaattaataccgTTATTGACAAGGACGAAAGGACCTTAATAATAAAATACCAGCATGAAGGAAAAtgtaaccatagaggtataacgGAAACGTTAGAGCGACTAAAACGTAATTATTATTGGCCTTCAATAATTACAGATGttacaaattatataaacaattgtgaaatttgtcaaagGACCAAATATAGTAGGAAAAAACCGTATGTCCCAATTATTTTAACGGAAACGGCAGGTAAGCCATTTGATTTATTACACGTTGATGTTTTCAAATTTGACGGTCAAGATTTTGTCACAATCTTAGATGCTTTTTCCAAATTAGGTCAAGCTTTTCCAATTCATGGCAAAACCGGCATAGAAGTATGTAATGCATTAATTCATTACTTTTCATTTTATGGGTTACCCCAACGCATAACTATGGACAATGGTCCTGAACTAAAAAATCTGACAGTACAAGAGTTACTTAAATCGCATAAAATAAAAGCACATTTTACCACACCGTTACATCATGAATCTAATGCACCGGTAGAAAGATTCCACTCCACATTGATCGAACATTTGAGAATATTacgggaaaaatataaaaacgaGAATGTAAAAACTTTAATGATGTATGCAGTAATAGCCTACAATAATACTATTCATTCCGCTACAAAATTTACACCATTAGAACTAACTCTAGGTCATACAGATTCCCGTGATCCTTCCGAATTAATTGATTCGAGTTTTTATGCAGATTATGTTATAAACCATAGAgataaattgaaaaaattatatgaaaacatTTCGGAAATTTTGGAAGATGTTGAGCCGAATGAGTTGTTACAAGAAATTAAATTAGTCAGCAATTATTTGGatgcaaataaaaacaaattacctTTTGAGCCGGTATTAGAAAATATTCTACTTTTGGAAAGGATAATTGAAATTAAAAGTTACAGTAAAGGAAATCAAATAATATTCATAATAGAAATTCCGATTTGTGAAATAGAAGGCTAcaattattatcatttatatccACTACCTACTCCAAACCTTAATTCATTTAGAGCCATTATACCCCACTCGAAATACCTGCTCCTTAATGAACACTATTACATATATACGGAAGAAAAGTGCCGGGAAATATCCAATGAAGAATTTATTTGTCACGAATCCAACTCAGCTGGTATTCAAGAGGATCCACCCTGTGAAGTCAAGATGCTGAAATTCATGAAAAACGTAACCAATTGTCATCAAATTCCAGTAGAAGTAGTCAACGCCAAGGCCCAAAGTTTAGAGAAAAACCAATGGATGATATTAGCACCACTATCTACAGTAGCTGTCCGAAAATGTGGCAACGACCGAGACAACGTACCCCTCAAAGGAACatatgttttagaagtgaaaCCACAGTGTGAAGTGCAAATTGAAGACATTCACATTCAAAGTCATCAAAGACTTGAAACAAAATATAGACACATTGAACTTCCCAATTTTAAAACTGATAGTGAAAGTGACGAAACCTATAATCCCCAATATAAAGAAATGGCGAACATTGCAACACCGCACCTTGTTTCGGAAAAGTGGCTGACAGTGTCAGAGTATCACAGCATTTTGCTGAATATCGAAGAGATATCTGTAACAGAGACACCTCCTGTACTACCAAAACCTGGCGATATTTATATTTTTGGAACGAACAATAGCTCCAAACGCCATGACTGGAGGTCTGATCAGTACAGATGGCGAAACAAAGGAGTAAAAAATCTGCCTGCCAAAAATCCTCTTTTAGTATGTTATTACTATGCCACATTTGAAGGAAAAGGCTTCAATAAAAGGGCTTACATGTTTTATGACTTTGTTGGCACTGTAAAGCATTTAACATTAATACATTATGTTGGCAGTTTAGGGAACTTAATCCATAAAGCGCATGGTAATAGAAAAAAGAATATGCACATAAAGCACATAATGACTGCAAAATCACAAATCACGTCTCAAAAAGACAAAGTAAAAGACAAACCACATAATGTTTATAAACGTTTGGTAGTTGAGGATGTTCATCCGGCACATGCGAGAGTCCTGCTACCCAGAAATAGAATGCAGGTTAGTAATACAATTCGCAAAGAAAGAGAACGTAAGTTACTATCAACTGATGACATAATCGGTTTATATTTAATGCGTGATGAAGTTGGggaatttattagaaaaattgaGTTACTTCCGTTCTTCTGTACTGTCACCTTCAGTACTGAAATGCTAGCTACTTTCTGTGAATTGAAATATAAATCTGTATTATTTTACGACACAACATTCAATCTAGGAGACTTCTATGTAAGTCCATTGACATATAAATATGATTATTTTGTAGATAGTCCTGTGATACCATTGGCATACATGGTTCACCACAGAAAGAATGCAGAAGTGTATGAAACTTTTTTTACATGCGTAAAAAAGGCTTACCCTGACATAGTAAACGTCCCAATAGTTACGGATAGGGAAGGTGGAATTTCAGTAGCAATACGAAACGTTCTAAAAACTGATAAACATTTTTACTGCTGGAACCACATACAACAAGATATAAGGCACTggctaaaaacacaaaaatgtataGATGCAGATGATATTAAAACTTATGTTAGTCACACCTGGGATCTCCTTGACAGTGATTCTCAAAGCGAATGTCAAGAAAAATATAGTGCAATGTCTTGCCAATGGAGTAAGGagttcaaaaaatattttgacaaaaatattaTTGGTGATGTTTATAAAAGTGGAAAATGGAAATTAATAAAACATGGACTGTACATTCCCGGTAGCGGAATAACAATAAACGCAGCAGAAAGTTTTAACGCAGTGCTGAAACGCTGCTTAGAGAGAACTGAAGTGAAAGCTCAAGTATTAGTTCTTACAATTTATCAACTGGACCTGTATTATCGGAGAGAAATTGTAAGAGGCTACTGTAATTTAGGCAATTATAAATTAAAACTTAACATGTTACACTTACAAAAAGACCCCGCGAGAATAGAGTTTCCGAAGCAACATCTCCCGTTAGAAAAAATTccatatatatttgaaaatagaGACGTTGAACATTTAAAGGGGACAAAAGAGAAGATACCTTATACACGATTCAGTATATCCAAAATGTTGGTGTTGCAAGGAAACGTGAAATTAATTTCAGAAGATCAGATGTTCGTTATAACAACAGGCAGAGGCGACAAGAATATCGTCAAactaaacatggcacattgtttctactaa
Protein Sequence
MQKVVRIPVKQNQGLGILNHEIFGDGTEMPLALVNVKNNLAVTTITNSKDNPVKVTFHEPLDIEPINCLDMNFYEKMEVDIMSEEQDNLLKNNLKNIRLDHCNIEEKNAIRKLCYEFRDIFHCEQIPLTFTNRIRHKINLKDDTPIFTKTYRYPEIHRNEVRQQISKMLDQGIIQNSTSPWSSPIWIVPKKLDSSGKKKWRIVIDYRKLNERTIDDRYPLPNITEILDKLGKSQYFTTLDLASGYYQIEMHPDDIPKTAFQTEQGHYEFKRMPMGLKSSPSTFQRVVDNILRGLQNEICLVYLDDIVIFSTSLQEHLDRLRKVFIRLREANFKLQLDKSEFLRKEVQYLGHIVTPSGVKPNPDKISAIKSFPLPKTRKDIKSFLGLVGYYRRFIKDFAKITKPMTVCLKKDMQIKHTAEFIQAFEHCKNLLINSPILQYPDFNQPFVLTTDASNYALGAVLSQGNIPNDKPVAFASRTLNDSETRYSVIEKELLAIVWACKYFRPYLYGRKFKIYTDHRPLVWIFSLKEPNSKLLRWRLKLEEFDYEIIYKKGSQNKNADALSRINLNPIETESLINNPGDINQDLLEFFPELVENTANFNEPQPSTSYAHSDNNIEGMRQSSPKIIIQSDVQVRPPHDQNESNTLSTPHSSSNQTLNNGIPILDDIVNNKRNQILIAKNPHNLLDVSQTRLDNLTITNVKIPKSNAKLIIEFLKKYTGSNKTYHLYFYDQTMYSEFNKVYMKHFQHSSLKLVKCTKLINTVIDKDERTLIIKYQHEGKCNHRGITETLERLKRNYYWPSIITDVTNYINNCEICQRTKYSRKKPYVPIILTETAGKPFDLLHVDVFKFDGQDFVTILDAFSKLGQAFPIHGKTGIEVCNALIHYFSFYGLPQRITMDNGPELKNLTVQELLKSHKIKAHFTTPLHHESNAPVERFHSTLIEHLRILREKYKNENVKTLMMYAVIAYNNTIHSATKFTPLELTLGHTDSRDPSELIDSSFYADYVINHRDKLKKLYENISEILEDVEPNELLQEIKLVSNYLDANKNKLPFEPVLENILLLERIIEIKSYSKGNQIIFIIEIPICEIEGYNYYHLYPLPTPNLNSFRAIIPHSKYLLLNEHYYIYTEEKCREISNEEFICHESNSAGIQEDPPCEVKMLKFMKNVTNCHQIPVEVVNAKAQSLEKNQWMILAPLSTVAVRKCGNDRDNVPLKGTYVLEVKPQCEVQIEDIHIQSHQRLETKYRHIELPNFKTDSESDETYNPQYKEMANIATPHLVSEKWLTVSEYHSILLNIEEISVTETPPVLPKPGDIYIFGTNNSSKRHDWRSDQYRWRNKGVKNLPAKNPLLVCYYYATFEGKGFNKRAYMFYDFVGTVKHLTLIHYVGSLGNLIHKAHGNRKKNMHIKHIMTAKSQITSQKDKVKDKPHNVYKRLVVEDVHPAHARVLLPRNRMQVSNTIRKERERKLLSTDDIIGLYLMRDEVGEFIRKIELLPFFCTVTFSTEMLATFCELKYKSVLFYDTTFNLGDFYVSPLTYKYDYFVDSPVIPLAYMVHHRKNAEVYETFFTCVKKAYPDIVNVPIVTDREGGISVAIRNVLKTDKHFYCWNHIQQDIRHWLKTQKCIDADDIKTYVSHTWDLLDSDSQSECQEKYSAMSCQWSKEFKKYFDKNIIGDVYKSGKWKLIKHGLYIPGSGITINAAESFNAVLKRCLERTEVKAQVLVLTIYQLDLYYRREIVRGYCNLGNYKLKLNMLHLQKDPARIEFPKQHLPLEKIPYIFENRDVEHLKGTKEKIPYTRFSISKMLVLQGNVKLISEDQMFVITTGRGDKNIVKLNMAHCFY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-