Tcit046038.1
Basic Information
- Insect
- Tiliacea citrago
- Gene Symbol
- stc
- Assembly
- GCA_963921375.1
- Location
- OY992811.1:3204547-3206253[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.5 2.5e+04 -3.1 3.6 12 18 115 122 115 123 0.78 2 14 7.1e-06 0.12 13.9 20.0 2 19 131 148 130 148 0.90 3 14 0.22 3.7e+03 -0.5 1.1 1 5 157 161 157 161 0.96 4 14 1.1e-07 0.0018 19.7 16.8 1 19 185 203 185 203 0.97 5 14 1.8e-06 0.03 15.8 12.2 1 18 255 272 255 273 0.97 6 14 3 5.1e+04 -5.9 3.6 6 10 278 282 277 284 0.70 7 14 0.0064 1.1e+02 4.4 9.5 1 19 313 331 313 331 0.96 8 14 0.33 5.6e+03 -1.0 1.0 5 10 380 385 380 385 0.94 9 14 1.5 2.5e+04 -3.1 11.2 1 11 391 401 391 402 0.86 10 14 0.06 1e+03 1.3 0.7 4 10 406 412 405 412 0.94 11 14 2.5e-08 0.00043 21.7 16.7 1 18 418 435 418 436 0.98 12 14 3 5.1e+04 -4.2 2.5 3 6 466 469 458 470 0.59 13 14 3 5.1e+04 -9.3 13.5 1 18 475 492 475 493 0.88 14 14 0.02 3.4e+02 2.9 16.1 5 16 534 545 524 549 0.76
Sequence Information
- Coding Sequence
- ATGTCTGCCTCTCCGCAGCAGACACAGGAGCTTTCAGAAGACCTGCTGAATGGCACCTACGAGTGCACCGTCTGCACCGAGCCGATCAGCCACCGCCAAGAGCTCTGGAAGTGCCGCTGCTGCTATGGCGTCTTCCACCTGCCATGCATCCGATTCTGGGCTCAGAGCCAGCGGAGGGAGCGTGAGCAGCAGCTCCGCTCCTCCTCCGGCGTCGCCGCACCTGGTGAGCTCGACCGCTTTCGCTGCCCCCTCTGCCAGTCCATTCAGGAGAAGGACACGCTGGAGGTGTACCGCTGTTACTGCGGCAAGATGACACGGCCGACCCCGGATGCGATGCTCGTGCCGGGCAGCTGCGGGCAGCCGTGCGAGCGACGCCAGGCGGACTCCTGCTGCCCACACCGCTGCACGCTGCTGTGCCACCCCGGGCCGTGCCCACCGTGCACGCGTGCGCGAGAGCAGGCCTGCTGGTGCGGCAAGCACACCAAGACCGTCGGCTGCTCCAGCGGCGTGCACGGCTACGAGTGCCGCGACACGTGCGACAAGCTGCTCGACTGCGGGCAGCACGGCTGTCGTGCCCCGTGCCACGAGGGACCGTGCCCGGTGTGCACCGTCATGGTCTCGGAACGGTGCTTTTGTGGGGCGACGGAGCGGCGCCGGCGGTGCGGTGCGGGGCCTGCCGAGGAGGACGGCGGAAGTGGCGGCGGCAGCGGCAGTGGCGGCGACGGCTTCCGCTGCATGGAGCGGTGCGTCAGGATGCGAGACTGCGGCAACCACGTGTGCGGTTTGGCATGCCACCCGGGCCAGTGCGAAAAGTGCTACCGCACCCCAGAGTGCCAGAAGTTCTGTCCGTGCGGCAAGACGCGTGTGAAGGTGGCGCGCGCTTCGTGCCTCGACCCCGTTCCCTCGTGCGGGCTGACATGTGAGCTGCCCCTGCCGTGCGGCCACCTTTGCTGGCTGACGTGCCACGACGACACACCGTGCGCGCCGTGCAAGGAGACGGTGACCATGCCGTGCGCGTGCGGCAGCCGCGAGATCAGCTTTCAGTGCTTCTGCCAGTACCTGCCCGAGTCCGAGTGGGACGCGGCGAATGCGCAGTGTGGGCGGGCTCCCGGCACCTTGCCCCTCTCAATGCCACCCAGGTGCAACCAGGTGTGCCGCAGCACGCTGTCGTGCCACAAGCACCGCTGCACAAACGTGTGCTGCACGGATGCAGATCACACGTGCCTGCAGATGTGTATTCGTAAGCTGTCCTGTGGGGTGCACCAGTGCGGGCAGCTGTGCCACCAAGGCCCCTGCCCGCCGTGCGCGCACGTCGGCTACGAGCGGCTGTACTGCCGCTGTCGCAAGACGTGGGTGGAGCCACCCGTGCCGTGCGGTACGCGGCCGCCTCAGTGCAACCACCCGTGCAGCATCCCCCGCCCGTGCGGGCACCCGCCCAACCACCCGTGCCACATTGAGCCGGAGTGTCCCAAGTGCGTGGTGCTAGAGGAAAAGCTGTGCGACTCGCACCAGAAGCCGATGCCGTTCCACATGCCGTGCTACAAGAAGGAGATCTCGTGTGGGCGGAAGTGTGGCAAGCACCTGCCGTGCTGCAGCAAGTCCTGCGAGCTTGTCTGCCACCCAGGCCCGTGCGAGCACAAGTGTGCCAAGAGCTTCCCCACCCTGGCAGACGTGCTGAGGCGCGGCAAGGGCGGTGCGGCGCGATGA
- Protein Sequence
- MSASPQQTQELSEDLLNGTYECTVCTEPISHRQELWKCRCCYGVFHLPCIRFWAQSQRREREQQLRSSSGVAAPGELDRFRCPLCQSIQEKDTLEVYRCYCGKMTRPTPDAMLVPGSCGQPCERRQADSCCPHRCTLLCHPGPCPPCTRAREQACWCGKHTKTVGCSSGVHGYECRDTCDKLLDCGQHGCRAPCHEGPCPVCTVMVSERCFCGATERRRRCGAGPAEEDGGSGGGSGSGGDGFRCMERCVRMRDCGNHVCGLACHPGQCEKCYRTPECQKFCPCGKTRVKVARASCLDPVPSCGLTCELPLPCGHLCWLTCHDDTPCAPCKETVTMPCACGSREISFQCFCQYLPESEWDAANAQCGRAPGTLPLSMPPRCNQVCRSTLSCHKHRCTNVCCTDADHTCLQMCIRKLSCGVHQCGQLCHQGPCPPCAHVGYERLYCRCRKTWVEPPVPCGTRPPQCNHPCSIPRPCGHPPNHPCHIEPECPKCVVLEEKLCDSHQKPMPFHMPCYKKEISCGRKCGKHLPCCSKSCELVCHPGPCEHKCAKSFPTLADVLRRGKGGAAR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -