Tcit039907.1
Basic Information
- Insect
- Tiliacea citrago
- Gene Symbol
- -
- Assembly
- GCA_963921375.1
- Location
- OY992805.1:1759915-1767021[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.025 3.7 9.6 0.1 1 23 214 236 214 236 0.98 2 12 0.00044 0.065 15.2 3.6 1 23 242 265 242 265 0.94 3 12 8.5 1.3e+03 1.7 2.5 1 23 279 301 279 302 0.67 4 12 5.7e-05 0.0085 17.9 3.2 1 23 561 583 561 583 0.98 5 12 0.0027 0.4 12.7 4.1 2 23 589 611 588 611 0.97 6 12 0.00024 0.036 16.0 0.7 2 23 620 641 619 641 0.94 7 12 0.0032 0.47 12.5 1.1 2 23 645 666 644 666 0.97 8 12 0.059 8.8 8.5 1.4 2 23 680 702 679 702 0.96 9 12 9.9e-06 0.0015 20.3 1.8 1 23 708 730 708 730 0.98 10 12 0.0016 0.24 13.4 1.8 2 23 737 758 737 758 0.98 11 12 0.0013 0.2 13.6 2.5 1 23 764 787 764 787 0.97 12 12 0.0037 0.54 12.3 3.4 1 23 791 814 791 814 0.95
Sequence Information
- Coding Sequence
- atggatgaagaaattttTCCGGTGATATGCCCCAAGAAAACGTATTCAAAACCGTTTAGGAAGGTGACAAAAACAACACCAGAGTTTAATAATGTGGAAAAAATCCTTAAGCCTTCGAAAAAGGCTTACGATCCTGGTGTACCATTGACTACTAAAGTTGCTGTGGAGTATTTGTTGAATGGGAAGTTAAAGACAAGCGTATGTCGTTACTGTCTAAAAGTAACGGTAGGGTTGTCCGAACTGGACCAGATAATGCATATAGCTGGCACAGGAGTCATCTATAAAGTGTCTATCAGAGAAATGATAGCCTGTTTCTACCCTTTCAAGGCGAGAACAGAAGAAAACTTCCCAGAGAAAATATGTCAAAAGTGCATAGACAAAGCTCTCAACGCATACCTCTTCACGCAGCAGTGCGAGCAAGCGGAAAGAGCTTTACACAACTGTTTTGATGACATGAATGAGAAAATCAATAAACTAGACCCTGTGGATAGACCAAAAAAGAGAGGTAGACAAAAGCTAAAACCAAACTTTAATGTATTGTACGCAGAACATTGTAAAGTAATGGATTATGCTGAACCGATAAGAAACATCATCAATTTACAAACCGAATCTTTGAGTAATGAACCAGATTGGAATGAGTTTGAATGCAAAAGGTGCTGGCAAGTTCTCCCAGACTTAGAATCCTTGCTGAACCATGAGCAAAAACATCCAAAATACATGTGGTATCATTGCCGATTATGTGGTAAATCATTTGTGAAATTAAACCAACTAAAGAAACACTTTAACCAAGTCCATATACGAGGAAAAGGGAATACTGCAGAAGTAGATAAGACTTACAAATGTAAAGAATGTGGAAACCTAACAGAGAATCACGTACAACATCTACAGCATTTAGAGAAACATAAGTTTAAGAGTATAATGAAACATTTGATTGAAAAGAAAACGGACCAATTGTGTTTGGTTTGCTTGAAGAAGAGTACAGAGTTGGTGGAGTTGGACAAAATGGTCTGCATACATGGAAGTTGTCCGGAATTGGTTGGAGATAAATCAATGTATACGGTGCTAGCTTCAACTTTACCCGATATGACCTACCTACACAACTTCATTGGGACAAAAATATGCGAAAAGTGCCTTAATCATGCTATCActtcatatatttttatacacCAGTTCAATTTCACTAGGGAACGGTTAGAACTATGCGTCAGCCTCATGCTAGATAACCTTAGTAAAATGAAACCACACGCTAATGTGTTCGTGCAAGTTTCACCACCGAGCATAATGGCTCCTCCAGaagatttggatgaaactttACTATTAGATGAGAATGACTTCTTCGATGAGAGTAAATTCAAAATAGATGTGCTTGAAGACGAATTTAGACTGAAATCTGAGAGTGAAAGTGAATCAGAGCCGCAAGATAAATTCGAACCATCTCCACAAGGTAAATTCGAAATAGAACCACACGATATATTCGAACTATCACCACCAACAAAACGATTTAAAGCAGATCTAATATCAACCCCAGAAATAGAGAATTTAGCTAGAAACGCCACTAAAACgtacattaataaaaaactggTCAACGGCGTGCAACAAAATTCTAAATACCCTGTCGATGTTTGTAGCGAATTTTTAACGTTTAACAAAAGGAAAATTGTTGAAAAGGTCTCGTTTAAATTCACTTGTCCGCTTTGTAGTAAACATTTCATATCAGAGTATTTCTTAAAAAGACATATtctaaaacatttgaataaGCAAGTTCAGTGCAATATCTGTCATGGTGTATTCAAATCCAAATTCCATTTGTATGAGCATACTAAAATGACACATTTACTAAAAGAGAGCTTTTATATGTCCTGTAAAGTATGTGGCAGGAATTTTACAGATACAGATAAGTTACAAACTCATGAAGAAAACCATAGAATCAAGCCTTGTCAACTTTGCAGTAAAATCTATGTGACCCAAGCTCATTACGATAATCACATCCAAAGACACGCAGTCAAACTGaagcttttaaaagaaaaacaagctCAAACATGCAGTTTTTGCGAGAAAGAATGTTCAAACGACAATGAACTCTCTGTTCACGTTAATAAGAtacatttacaaataaaaccaTACAGCTGCGACATGTGTGATAGACAATTTTACACTGAAAGTAATTTGAGGAGCCATAAAAAGGTACATAGCATGCCTTCGAAGGAAACGTGCGAATTTTGTAGCAAAACTCTTAGAAGTCGGAAACAGTTGGTAATTCATGTTAGGAAACACATCGGCGCCAAACCGTTTTGTTGTCAAGTTTGCGGCCAAACATTCTACTCAGCTTTTAAGGCTAGAGAACATATGAGAATATATCATGGAGGCCGATTCTGCTGTAGAATTTGTAAATCCATTTTCGCAACCAAATATGAACTTAAAAAACACGTTAGTAAAGATCATAATACCATCTAG
- Protein Sequence
- MDEEIFPVICPKKTYSKPFRKVTKTTPEFNNVEKILKPSKKAYDPGVPLTTKVAVEYLLNGKLKTSVCRYCLKVTVGLSELDQIMHIAGTGVIYKVSIREMIACFYPFKARTEENFPEKICQKCIDKALNAYLFTQQCEQAERALHNCFDDMNEKINKLDPVDRPKKRGRQKLKPNFNVLYAEHCKVMDYAEPIRNIINLQTESLSNEPDWNEFECKRCWQVLPDLESLLNHEQKHPKYMWYHCRLCGKSFVKLNQLKKHFNQVHIRGKGNTAEVDKTYKCKECGNLTENHVQHLQHLEKHKFKSIMKHLIEKKTDQLCLVCLKKSTELVELDKMVCIHGSCPELVGDKSMYTVLASTLPDMTYLHNFIGTKICEKCLNHAITSYIFIHQFNFTRERLELCVSLMLDNLSKMKPHANVFVQVSPPSIMAPPEDLDETLLLDENDFFDESKFKIDVLEDEFRLKSESESESEPQDKFEPSPQGKFEIEPHDIFELSPPTKRFKADLISTPEIENLARNATKTYINKKLVNGVQQNSKYPVDVCSEFLTFNKRKIVEKVSFKFTCPLCSKHFISEYFLKRHILKHLNKQVQCNICHGVFKSKFHLYEHTKMTHLLKESFYMSCKVCGRNFTDTDKLQTHEENHRIKPCQLCSKIYVTQAHYDNHIQRHAVKLKLLKEKQAQTCSFCEKECSNDNELSVHVNKIHLQIKPYSCDMCDRQFYTESNLRSHKKVHSMPSKETCEFCSKTLRSRKQLVIHVRKHIGAKPFCCQVCGQTFYSAFKAREHMRIYHGGRFCCRICKSIFATKYELKKHVSKDHNTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907334;
- 90% Identity
- iTF_01526423;
- 80% Identity
- -