Basic Information

Insect: Tiliacea citrago
Gene Symbol: -
Assembly: GCA_963921375.1
Location: OY992810.1:7846947-7849840[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.063 9.4 8.4 1.2 1 23 10 33 10 33 0.91

2 15 0.0024 0.36 12.8 0.9 1 23 133 155 133 155 0.97

3 15 0.16 24 7.1 0.5 1 23 160 183 160 183 0.95

4 15 0.74 1.1e+02 5.0 0.5 2 23 191 213 190 213 0.92

5 15 5.7e-05 0.0084 17.9 2.6 1 23 220 243 220 243 0.96

6 15 0.00025 0.037 15.9 4.1 1 23 249 271 249 271 0.98

7 15 2.2e-05 0.0033 19.2 0.8 1 23 277 299 277 299 0.99

8 15 0.0065 0.97 11.5 1.0 1 23 378 401 378 401 0.95

9 15 6.7 1e+03 2.0 4.4 2 23 474 497 473 497 0.86

10 15 0.0013 0.19 13.7 0.4 1 23 501 523 501 523 0.98

11 15 1.4 2.1e+02 4.1 2.6 1 23 528 551 528 551 0.93

12 15 1 1.5e+02 4.6 2.8 1 23 558 581 558 581 0.93

13 15 9e-05 0.013 17.3 0.6 1 23 588 611 588 611 0.96

14 15 2.8e-05 0.0041 18.9 4.9 1 23 617 639 617 639 0.97

15 15 9.2e-06 0.0014 20.4 4.7 1 23 645 667 645 667 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.063	9.4	8.4	1.2	1	23	10	33	10	33	0.91
2	15	0.0024	0.36	12.8	0.9	1	23	133	155	133	155	0.97
3	15	0.16	24	7.1	0.5	1	23	160	183	160	183	0.95
4	15	0.74	1.1e+02	5.0	0.5	2	23	191	213	190	213	0.92
5	15	5.7e-05	0.0084	17.9	2.6	1	23	220	243	220	243	0.96
6	15	0.00025	0.037	15.9	4.1	1	23	249	271	249	271	0.98
7	15	2.2e-05	0.0033	19.2	0.8	1	23	277	299	277	299	0.99
8	15	0.0065	0.97	11.5	1.0	1	23	378	401	378	401	0.95
9	15	6.7	1e+03	2.0	4.4	2	23	474	497	473	497	0.86
10	15	0.0013	0.19	13.7	0.4	1	23	501	523	501	523	0.98
11	15	1.4	2.1e+02	4.1	2.6	1	23	528	551	528	551	0.93
12	15	1	1.5e+02	4.6	2.8	1	23	558	581	558	581	0.93
13	15	9e-05	0.013	17.3	0.6	1	23	588	611	588	611	0.96
14	15	2.8e-05	0.0041	18.9	4.9	1	23	617	639	617	639	0.97
15	15	9.2e-06	0.0014	20.4	4.7	1	23	645	667	645	667	0.99

Sequence Information

Coding Sequence: ATGATACTTAGACATAGAGACAAAGGATATTTGTGCTGCTATTGCACGGAATTTTTCCAAGAACCGATGAATTTGAAAGTACACACTTTAGGGGAACATCAGAATGCAGAAAAATTCTATGGTAACATTAAAGCCAGGGGAACATCTAGGTTCTTGGTCAAACTTGACATAACGAACCTAAAATGCATGCTTTGCAGCGCCAATATAGATTCTCTCGAAGATCTATTCGTCCATCTGACAGAGAAACATAATAAGAACTTCCACACCGATATACACAATCAAATATTTCCTTTCAAGTTCAATACGAAGCAACTGAAATGCTGCCAATGTACTAATGATGGCGTTTTCGCCACGTTCAGCGCATTACACGAGCATATGCACAAACACTACCGATATTTCATTTGTAGCGAGTGTGATGCTGGATTCATCAACCATTATACATTATCCAGTCATAAAGTCACTCACACGAAAGGAACCTTCGTCTGCCGAAATTGTCCAGTCGTATTCGACAACGTATACAAGAGAAGAAACCACGAGATGAGCAGCCATAAGAAacctggcaaattaaataaatgctatttCTGCAATGAAGGTTTTAAGGACTATATTACGAAGGAGTTACATCTGGCAAAAGTTCATGGCGTCGCTCCACGAAAACACAACTGCACTGCGTGTGACAGGAGCTTTTCTTCCAATAGTTTTCTTAGCGCACATATCAGACGCTTCCACCTGATGGAGAAAAATCACAAATGTTCAGACTGCGACAAAGCTTTCTTTAGGGATTGCGACCTAAAAAATCATTTGTTGGTTCATACAGGAGCGAAAAATTTCAAATGTGAAGTCTGTTCTAAGTTTCTTGCTACGAAATCTGTTCTGACTCAGCATATGAGGATTCATAACAATGATAGACGTTTCAAATatAAACAACAAAAAGTGGCTACAGCTACGAAAATCAAAATACAGCCGAAAGCTGAAACGACTGTAATACCTATTGGagaacacataaaaataaaaccagagACAGTGCCTCGACCTGGACAAAAGCGGCTACTACACAAGCATCTACACAATCTGAAAATAATCCTAGAATCTACTAACGCCACGATGATACTCAGACATGGAGACAAGGGATATTTGTGCTGCTATTGCACGGAAGCTTTCCAAGAACCCATGAACTTAAAAGTACATACTTTGACGGACCATCAAAATGCAGAAAAAATCTATAATACCCTTAGAGCCAGAGGCCCATCTAGGTTCTTAGTCAAACTTGACATAACGAACCTAAAATGCATGCTTTGCAGCGCCAATATAGATTCCCTCGAAGATCTATTCGTCCATCTGACAGAGAAACATAATAAGAACTTCCACACTGATATACACAATCAAATATTTCCTTTCAAGTTCAATACGAAGCAGCTGCGATGCTGCCAATGTACTAATGACGTGGTTTTCGCCACGTTCAGCGCATTACACGAGCATATGCACAAACACTACCGTCACTTCGTTTGTAACGAGTGTGATGCTGGATTCATCAATCATATATCATTATCAAGTCATAGAGTCACTCACACGAAAGGGACCTTTACCTGCCGACATTGTCCTGAGATATACGATAACGTATTCAAGAGAAAGAACCACGAGATGCGTAGCCATAGCAAAGCTGGCAAATTACATATATGCCATTTCTGTAATGAAGGTTTTAAGGAATATGTAACGAAGGAATTGCATCTGACTACGGTTCATGGCGTTACTCCACGAAAGTACAATTGCGCAGCGTGTGACAGGAGCTTTTCTTCCAATAGTTTTCTTAGTGCACATGTCAGAAGCTTCCACCTGATGGAGAAAAGTCACAAATGTTCAGTGTGTGACAAAGCTTTCTTCAGAGAAAGCCACCTAAAGAAACATGAGTTGAGTCATACAGAGGCTAAAGATTTTAAATGTGAAATCTGTTTAAAGCATTTTTCCAATAAATCTACTTTGTCGCGGCATAAGCGGATTCACAACAATGATAGGCGTGTTAAATGTAAAACCTAG
Protein Sequence: MILRHRDKGYLCCYCTEFFQEPMNLKVHTLGEHQNAEKFYGNIKARGTSRFLVKLDITNLKCMLCSANIDSLEDLFVHLTEKHNKNFHTDIHNQIFPFKFNTKQLKCCQCTNDGVFATFSALHEHMHKHYRYFICSECDAGFINHYTLSSHKVTHTKGTFVCRNCPVVFDNVYKRRNHEMSSHKKPGKLNKCYFCNEGFKDYITKELHLAKVHGVAPRKHNCTACDRSFSSNSFLSAHIRRFHLMEKNHKCSDCDKAFFRDCDLKNHLLVHTGAKNFKCEVCSKFLATKSVLTQHMRIHNNDRRFKYKQQKVATATKIKIQPKAETTVIPIGEHIKIKPETVPRPGQKRLLHKHLHNLKIILESTNATMILRHGDKGYLCCYCTEAFQEPMNLKVHTLTDHQNAEKIYNTLRARGPSRFLVKLDITNLKCMLCSANIDSLEDLFVHLTEKHNKNFHTDIHNQIFPFKFNTKQLRCCQCTNDVVFATFSALHEHMHKHYRHFVCNECDAGFINHISLSSHRVTHTKGTFTCRHCPEIYDNVFKRKNHEMRSHSKAGKLHICHFCNEGFKEYVTKELHLTTVHGVTPRKYNCAACDRSFSSNSFLSAHVRSFHLMEKSHKCSVCDKAFFRESHLKKHELSHTEAKDFKCEICLKHFSNKSTLSRHKRIHNNDRRVKCKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -