Tcit044204.1
Basic Information
- Insect
- Tiliacea citrago
- Gene Symbol
- -
- Assembly
- GCA_963921375.1
- Location
- OY992810.1:7839104-7843385[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.041 6 9.0 1.0 1 23 67 90 67 90 0.92 2 13 9.3 1.4e+03 1.5 0.1 2 23 118 140 117 140 0.89 3 13 7.7 1.1e+03 1.8 5.6 2 23 163 186 162 186 0.89 4 13 0.2 30 6.8 3.3 1 23 252 275 252 275 0.94 5 13 0.33 49 6.1 0.3 2 23 302 324 301 324 0.94 6 13 0.002 0.3 13.1 3.1 2 23 347 368 346 368 0.96 7 13 0.00011 0.016 17.0 0.2 1 23 372 394 372 394 0.95 8 13 0.0012 0.18 13.8 0.4 1 23 399 422 399 422 0.97 9 13 0.00086 0.13 14.2 1.5 1 23 429 452 429 452 0.95 10 13 0.00014 0.021 16.7 0.5 2 23 460 482 459 482 0.95 11 13 0.00018 0.027 16.4 2.3 1 23 488 510 488 510 0.97 12 13 2e-05 0.003 19.4 1.4 1 23 516 538 516 538 0.99 13 13 1.7e-05 0.0025 19.6 2.7 1 23 544 567 544 567 0.98
Sequence Information
- Coding Sequence
- atgGCTACAGCTACGAAAATCAAAATAGAGCCGAAAGCTGAAGAAACTGTAGTAGCTAAGGAagaacatataaaaataaatccagAGACAGCGCCTCGACCGCGCATAAAGCGACTACTACACAAGCATCTACACAATCTGAAAATAATCCTAGAATCTACTAACGCCACGATGATACTCAAACATGGAGACAAAGGATATTTTTGCTGCTATTGCACGGAAGCTTTCCAAGAACCCATGAGTTTGAAAGTACACACTTTAGGGGAACATCAGAATGCAGAAAAATTCTATGGTAACATTAAAGCCAGGGGACCATCTAGGTTCTTAGTCAAACTTGACATAACGAACCTAAAATGCATGCTTTGCAGCGCCAATATAGATTCTCTCGAAGATCTATTCGTCCATCTCACAGAGAAACATAATAAGAACTTCCACACTGATATACACAATCAAATATTTCCTTTCAAGTTCAATGCGAAGGAACTGAAATGCTGCCAATGTACTAGTGACTTCGTTTTTGCCACGTTCAGCGCATTACACGAGCATATGCACAAACACTACCGACACTTCGTTTGTGGTCAACAAAGCACTGTCGTGGAAAAAGAAACGGACGACAAAGAACTTACGGAAAATATAGGTGAAAAAGAACTAAAAATAACACCAAGAACCGAACTGTTAAAACATCGAAGTAATATTAAAGAAGTCCTTCTTAATTCTAACGCGACTCCTATAAGACGGTACGGAGGGATCGGATACACTTGTTGTTACTGTCTAGACCAGTTCGAACACCCTGCAGATCTTAAGAAACATACCCTAGAGAACCACAAAAATATCTCAGAAGCAAACTTTATGAAGAAAATGAATATGTCCGAATATATCGTCAAGTTAGACATAAGTGCATTGAAATGCAAGCTTTGCAACAGTGATATGAATACTCTAGATAATTTAATAGACCATCTTCAAAACTTACATGCGAAAAAAATTTACATGGACCATATAAACCATATCTTCCCTGTCAAATTCGGTAACGATTTGCTGACATGCACTATTTGCTCGAACACATTTAGTAAGTTTAGGACTCTTGTTAGACATATGCATATTCATTACAGGAATTACATTTGCACCGTTTGCGACACCGGATTTGCGAACCGAAACTCATTAACACAACATTTAGTAAATCACAAAACAGGGGCATACGTTTGTGACTACTGTCCAAAAGTCTATCCTACTCTAGTAAAAAAACGAATGCATGAACGAACATCCCACACTCATGTCCATGCTACTTATAAATGTGGTTATTGtaaagaatcttttaaagaccaTGGACAAAAGGAAGCTCATGTAACTTCTGTACATGGTGTGGTATCATTAAAAACTGTATGTCAAGCTTGCAACAAAGTATTTCCCAGTAGGAAGAAACTTAACATCCACATAAAAAGAGACCATCTAATGGAGAGGCCACACAAATGTAAAGAATGTGACATGGCGTTTTATTCCACAACAGGGCTAAAGAGTCATATGGTCAAGCATACAGGGTTGAAAGAATTTCAGTGCTCAGTATGTCTGAAGAACTATGGAAGGAAGAAGACGCTGAATGCACATATGCAGACACATTCTGAGGAGAAGAGGTTCAAATGCGAAAAGTGTGCGCAGAAATTTACGCAGAAAAGCACTTGGAGAGTTCATATGAGATCCAAACATGGAgaaattgtttaa
- Protein Sequence
- MATATKIKIEPKAEETVVAKEEHIKINPETAPRPRIKRLLHKHLHNLKIILESTNATMILKHGDKGYFCCYCTEAFQEPMSLKVHTLGEHQNAEKFYGNIKARGPSRFLVKLDITNLKCMLCSANIDSLEDLFVHLTEKHNKNFHTDIHNQIFPFKFNAKELKCCQCTSDFVFATFSALHEHMHKHYRHFVCGQQSTVVEKETDDKELTENIGEKELKITPRTELLKHRSNIKEVLLNSNATPIRRYGGIGYTCCYCLDQFEHPADLKKHTLENHKNISEANFMKKMNMSEYIVKLDISALKCKLCNSDMNTLDNLIDHLQNLHAKKIYMDHINHIFPVKFGNDLLTCTICSNTFSKFRTLVRHMHIHYRNYICTVCDTGFANRNSLTQHLVNHKTGAYVCDYCPKVYPTLVKKRMHERTSHTHVHATYKCGYCKESFKDHGQKEAHVTSVHGVVSLKTVCQACNKVFPSRKKLNIHIKRDHLMERPHKCKECDMAFYSTTGLKSHMVKHTGLKEFQCSVCLKNYGRKKTLNAHMQTHSEEKRFKCEKCAQKFTQKSTWRVHMRSKHGEIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00906437;
- 90% Identity
- -
- 80% Identity
- -