Tcit042887.1
Basic Information
- Insect
- Tiliacea citrago
- Gene Symbol
- -
- Assembly
- GCA_963921375.1
- Location
- OY992808.1:12335256-12381219[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.016 2.4 10.2 6.8 1 23 72 95 72 95 0.97 2 13 0.0036 0.54 12.3 7.7 1 23 101 123 101 123 0.98 3 13 1.7e-05 0.0026 19.6 0.9 1 23 129 151 129 151 0.98 4 13 6.4e-05 0.0094 17.8 3.4 1 23 157 179 157 179 0.98 5 13 5.7e-05 0.0085 17.9 0.5 1 23 186 209 186 209 0.91 6 13 8e-06 0.0012 20.6 0.6 1 23 217 240 217 240 0.96 7 13 0.0014 0.21 13.5 0.3 2 23 247 267 246 267 0.94 8 13 4.5 6.7e+02 2.5 1.8 1 14 273 288 273 289 0.83 9 13 0.32 47 6.2 0.8 11 23 337 349 337 349 0.93 10 13 0.00021 0.031 16.2 1.1 1 21 355 375 355 376 0.94 11 13 0.00095 0.14 14.1 0.5 2 23 381 403 380 403 0.96 12 13 0.13 20 7.3 0.1 1 23 412 435 412 435 0.94 13 13 1.8 2.7e+02 3.8 3.6 2 23 442 463 441 464 0.94
Sequence Information
- Coding Sequence
- ATGCTTTTCCTTTTTTATGTTCAATATAACAATGCTTTCAGGCTGCTGATGGGATTGGCTCGCTACGGCAGTGCGTCAGCgatgtttgccgaagctcaAGTGGACGGCTTTCACGCCATTAGACGTAAGAGAGCAGCATCGCTGATGCGAAGGCAATTCGACAACGCATCAAACTGGCACAGCCACGTCAAGCTCCATTCAACTGAAGAACCGTACCATTGTGACCTCTGTGACTACAAATGCAAGGTCCAGAAGTACCTCACTCGGCACGTAAAAAAGACGCACACTAAGCCCACCGGCCATCAATGTCCTGTGTGCGCTAAGTGCTTCCACTTTGACTGCAACCTCCGAGCCCACATGAGAGTACATACCGGTGAAAAGCCATTCAAATGCAACGTGTGTGACAAGGCGTTTAATTCACGTTACTCATTGAGCGGGCACAAAATGATACATACTGgaGAGAAACCATTTCAATGTCAGTACTGTGATTACGCCTGTCGGGACAACTCTACGATCAGAAGGCATATGGAGAGACACCTAGGAATATCCAAAGACTATCCCTGTTCTATATGTAAAAAGAATTTTAAAAAGAAGGAGACATTACAAATTCACGTGGATGAGGTACATTTTGAGCTGGATACCAGGAAGCATCCCTGTGAGCTTTGCGAGAAAGTCTTCAAAACTAAAGGAACGCTCAATATACATGTTAACACAGTCCATAAGAAAACAAATCGTATAAAATGTGAGATTTGCGGCGTACTCTCTACTAAGAACAATTTACAGGCGCATATGAGGCGACATATAGATGTTAAGCCTTACAAGTGTAGCTACAAACCGTGTGGAAAGAGGTTTAAAGAtaagAGAGAAGGGCGCCGGGTATACGCGTGTTTCCTCGACCTATCAAAAGCGTTTGATCTCGTAGCATATGACGTGTTATGGGAGAAGCTCGGAAGCGCGGGTGTACCGGTGGAATGTACCTCTCTTCTTAAGTACTGGTACTCCAATCAGAGAAATCAGAGCGATCTCAAACGCCACCAAATAACCCACTACCCAGACAACCAACACGTGTGTACTGGTTGCAACAGACGGTTCCCTCGCAAGTTCAGACTGACCAGACATATACTGAATGGGTGTCGAGTGCAGTGTCACTATTGTGGACAGTTaTTTACAGCCAAAATCTACCTGGCTCAGCATATAAAGAATGCTCACGGCCCCTACCCCAAGTCCAGAGAGTACTTATGTGACATTTGTGATATGGTCACGTACAGCAGAAGAGGTATCATACAGCATTTAAAATATGGGCATGGCACTGAAAAAGACACAAAATGTCAAATATGCAAAAAGGATTTGTTCAAATATCTAACTTTGAAAGAACATTATTTGAGTCATCACAACCTTTTATACAGTTTAATGGATAAAAAgaaaaaaactaaaattccaATAAAAGAGGAACCTATAGAAGAGATGGGTGACCCGCCAGATTTTATGTATGAAGTGGAAATACAGAAACACGAAATAGACGATACCCCAGCAGATCCACCACTATTTCCACTCCAACCCACCAGCCCCGAACACTTCACCATAGACTCTGACACCATCACTTACTCAAAGAAAGTACTATCAGAGGACATATCACGAAGTCTGATAGAACGTGATACTATGACTGATGTGTTCGACGACTTCTTCATTGGAAACGTACTGAAGAAGCCTGAGGAAGTTCTTGAACTGCCAAAACAAATAGTAGATGAGGAAAAGAAAAAGCGTGTGGAAAAGCGTTTAGAAAAACTTCTAGTCGAGGCGAGAGTACGCAATCAATGGGTGGTTTTGGAGAAATTACGGAGACAATACAACCGACGAATCAAGATGGCGACCAGCGGTGGAGTTAAAAAAGAACAAAAATCCGTTAGATATTTCAAAAAACCAGAAAATAACAACGAATCTACTAAATCACAAAAAGATGCCAATGATAAAGTAGCCCACATTGAAGATAATGCTAAAATAGATAATCAAGCAACTGACGATATTAACCAACAAAAGATTGATGCAGAAGAAGAAAACAGTAAAaagattaatgattataatgaaAATGGTGAAGATAGAATAATTGATGATGAACATGCTGACAAAAATcgtgatgaaataataaaagatgtagaAATTGCTGACAAAAATGGTGATCAGACAATTAATTGTGATGAAAATAATACTGATGATATTAATGATGAGATTATAGATGATTTAAAAGACCTCGACTATAAAGACaCTCTTCAAAACGAAAACAGAGTTAAAACTCCACTGCAAACAACATTTCGATATATGCAACGAAAAAATGCTGAAAAAATGTCCCTTCTGTGGATATGTTACCGACCTAACAATAACAAGACACATTAA
- Protein Sequence
- MLFLFYVQYNNAFRLLMGLARYGSASAMFAEAQVDGFHAIRRKRAASLMRRQFDNASNWHSHVKLHSTEEPYHCDLCDYKCKVQKYLTRHVKKTHTKPTGHQCPVCAKCFHFDCNLRAHMRVHTGEKPFKCNVCDKAFNSRYSLSGHKMIHTGEKPFQCQYCDYACRDNSTIRRHMERHLGISKDYPCSICKKNFKKKETLQIHVDEVHFELDTRKHPCELCEKVFKTKGTLNIHVNTVHKKTNRIKCEICGVLSTKNNLQAHMRRHIDVKPYKCSYKPCGKRFKDKREGRRVYACFLDLSKAFDLVAYDVLWEKLGSAGVPVECTSLLKYWYSNQRNQSDLKRHQITHYPDNQHVCTGCNRRFPRKFRLTRHILNGCRVQCHYCGQLFTAKIYLAQHIKNAHGPYPKSREYLCDICDMVTYSRRGIIQHLKYGHGTEKDTKCQICKKDLFKYLTLKEHYLSHHNLLYSLMDKKKKTKIPIKEEPIEEMGDPPDFMYEVEIQKHEIDDTPADPPLFPLQPTSPEHFTIDSDTITYSKKVLSEDISRSLIERDTMTDVFDDFFIGNVLKKPEEVLELPKQIVDEEKKKRVEKRLEKLLVEARVRNQWVVLEKLRRQYNRRIKMATSGGVKKEQKSVRYFKKPENNNESTKSQKDANDKVAHIEDNAKIDNQATDDINQQKIDAEEENSKKINDYNENGEDRIIDDEHADKNRDEIIKDVEIADKNGDQTINCDENNTDDINDEIIDDLKDLDYKDTLQNENRVKTPLQTTFRYMQRKNAEKMSLLWICYRPNNNKTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -