Tcit042705.1
Basic Information
- Insect
- Tiliacea citrago
- Gene Symbol
- -
- Assembly
- GCA_963921375.1
- Location
- OY992808.1:8233956-8254793[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.4 3.6e+02 3.4 0.6 1 23 112 135 112 135 0.85 2 11 0.0065 0.97 11.5 2.6 1 23 142 164 142 164 0.98 3 11 1.9 2.9e+02 3.7 0.8 2 22 169 189 168 191 0.83 4 11 0.00021 0.031 16.2 2.3 1 23 202 224 202 224 0.98 5 11 2.5e-05 0.0037 19.1 0.2 2 23 229 251 228 251 0.96 6 11 4.8e-06 0.00072 21.3 1.1 1 23 258 281 258 281 0.98 7 11 0.047 6.9 8.8 4.5 3 23 290 310 289 310 0.97 8 11 7.4e-07 0.00011 23.9 0.1 1 23 321 344 321 344 0.95 9 11 4.6e-05 0.0069 18.2 3.4 1 23 350 373 350 373 0.93 10 11 6.2e-06 0.00093 21.0 0.4 3 23 384 404 383 404 0.98 11 11 0.052 7.7 8.6 3.9 2 23 411 433 410 433 0.92
Sequence Information
- Coding Sequence
- ATGACCGagGTACCAATCctaaaagtaaataaactacACAATTTCCAACGCTCGCCCATAGAAATTGACGGCGTTACCAACTCGGAAACTGAAATAGAAGTAAAGCCGGAGCCGACCGAGTTGGAATGCTTAGAAGTCGAAACTGACGTTAAAGTTGAGCATGATTCCTCGGAAAATGAGACTGAACCTTTATcggaattaaaaaagaagaaaaggaaAACGAAGAATGAGttgagGTACGAAGGCAAGATAGGAATAGTGATTCTTACTGAAAAGGAACTGATGGATGAAAGAGAACGCATGGCCAAAAAAGAAGGTTACTTGAAGCTGCCATACAAATGTGAAGACTGTATTGTCGGTTTCGATCATGAGTTGACGCTGGTCAGTCATAATGAGAAAAGGCATAGGCAGatgaaGAATGGTTTCCAATGTAATGTCTGCAAGTCGGTATTAAGCACGAAGTTTTCTTACAACGAACATACAAAAAGACACGTCAGAAGAATGGAGTGCATGATATGCCGCAAGAGATACAACCACATGCAGTCTGCTGTACAGCATTACGATGAACAGCACGCCCCTGCTGGCGCAGGCATACAACAAGGATATACCTGCAAGGAATGTGGATTCACAACCACCTCAAACCGCGCGTATCGATACCATATGGACAAGCACAAAGAGAAACAAAGTTGTAGCATTTGTGGAAATACATTCGTGAACAGCAACGGTCTTAAGGTTCATATGTACACAGTCCACAAACAATCCTCTCGCGTATACAAATGCCAACAATGTAACAAGTCTTACCGCGCTCGCTCCGGCTTAGAATCCCACCAGCGTTCTGCACACGGCACGGCAGACACGCGCGCCTTCTGCGTTCAATGCAAGACGCACTACAGAACACAGCAGGGTCTGGCGCACCATTTGAGCACACATTCGAGGCATGTCAGTGACACTGATAAGAGATTCATCTGTGATGAATGCGGTGCCAAGTTTGTAACGAAGAGTAATCTGCAAGTGCATATCAACTGGGAACATTTCAAGATCAACACGCATCGATGTACTAAGTGCACTAAAGTCTTCAAAAGTCGTAACGCTCTGAACCGCCACGTTACCTATGTGCACAATAAGAAGAGACCGCCGCGCAACAAGATCTGCGACTATTGTGGAAGAGCTTTTACTACTCAAACAATCCTACAGTCGCACATCCGTACGCACACTGGAGAACGGCCGCTGCATTGCACTCACTGCTCGGCGACATTCGCACATTCAGCTGCTCTTTATACGCACAATAAACTGTTACATACTGCCAAATAA
- Protein Sequence
- MTEVPILKVNKLHNFQRSPIEIDGVTNSETEIEVKPEPTELECLEVETDVKVEHDSSENETEPLSELKKKKRKTKNELRYEGKIGIVILTEKELMDERERMAKKEGYLKLPYKCEDCIVGFDHELTLVSHNEKRHRQMKNGFQCNVCKSVLSTKFSYNEHTKRHVRRMECMICRKRYNHMQSAVQHYDEQHAPAGAGIQQGYTCKECGFTTTSNRAYRYHMDKHKEKQSCSICGNTFVNSNGLKVHMYTVHKQSSRVYKCQQCNKSYRARSGLESHQRSAHGTADTRAFCVQCKTHYRTQQGLAHHLSTHSRHVSDTDKRFICDECGAKFVTKSNLQVHINWEHFKINTHRCTKCTKVFKSRNALNRHVTYVHNKKRPPRNKICDYCGRAFTTQTILQSHIRTHTGERPLHCTHCSATFAHSAALYTHNKLLHTAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01118631;
- 90% Identity
- iTF_01193019;
- 80% Identity
- -