Tcit030903.1
Basic Information
- Insect
- Tiliacea citrago
- Gene Symbol
- -
- Assembly
- GCA_963921375.1
- Location
- OY992797.1:19074717-19077584[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.5e-05 0.0023 19.8 7.3 1 23 256 278 256 278 0.98 2 11 0.00087 0.13 14.2 2.0 1 23 284 307 284 307 0.96 3 11 0.00046 0.068 15.1 0.7 1 23 317 339 317 339 0.98 4 11 0.025 3.8 9.6 3.0 1 23 346 368 346 368 0.97 5 11 2.5 3.7e+02 3.3 10.7 1 23 374 396 374 396 0.98 6 11 3.4e-05 0.0051 18.6 0.3 1 23 402 425 402 425 0.96 7 11 0.0031 0.46 12.5 2.3 1 23 430 450 430 450 0.98 8 11 7.7e-07 0.00012 23.8 1.0 1 23 456 478 456 478 0.97 9 11 2.4e-05 0.0036 19.1 2.5 1 23 484 506 484 506 0.98 10 11 2.8e-05 0.0041 18.9 0.9 1 23 512 535 512 535 0.97 11 11 0.19 28 6.9 0.2 1 21 541 561 541 562 0.94
Sequence Information
- Coding Sequence
- ATGGCTAACGTAAAGAGTAGATTAAATGCACCTAAAAGTGCATCtacgaagaagaaaaagaagggacataaaacaaaaaaatcatcagcAGGTCCCAAGAAATCGCCCTTGAAGAGAAGTTATACAGATAGCAATATTGTCATGAAGCGTCCATGCACCCGCAATGTCATGACACCAgatcaaaaaatcaaattctTATTGAAAAATGGACACAAACTCAAGCAAAGATTTATTGCTAAACCACCTGTGAATGTCAAACCAATTCCTGAGGTAATGGTTGAGTCAAATCCTGGGCCAAGGGCTGAGCCACAAGGATGTTACAGCAAAACACAAGATAGCAATCTACCACTTATGACAAAAAATGGGcaccttaaaaaaaagaaactgtgCAATATGAAACTAGTTGATAGTATTCTGAAGAATGAACTGATGATTGTTGAACGCAGGAATACTGTACACACTGATGATGCGCCTCCCACAAAGGCACCTCTGGCAGTGACGCCTTTAAGAGTTGGTGTGGACAATAACAATGACATTGAAATAACTGACCAAAATAACACATCTCAAGACTACTCCGATGATGATGTATGCAAATTATCTGATACTATCTCTACAAAATCTGATGACATAACTGATGATGAAAACTGCTCAGATTCCTCAAAGGAAAAATCTGGGAGGAAAacttcaaaaaagaaaaaaaatatatataagccAAGACCAAGACATATCACACTGAAAAATGGTGTAGTATTAAAATTAGAGTACTTTGAGTGTGACCATTGCAACAGAACATTTAACAGGAAATGTTCCTTACGTAGACACATGTATGTGCATCTCGGTATAAAGCCATTTCAATGTCCTCGTTGTCCTCAACAGTTCAGGAGTCTCTACAATGTACAGGTTCATGTTCACCGTTACCACAAGACAAGTGAAGATGATCCGGAGCTTTTTATTTGCAATTTCTGTGAGAAACCATTTCTTGTAAAAGAAAACTTGAAGAAACATTTAGAAACTCACACCGATAGTGGGAGTTCATTCAAATGCATTTACTGTAACAAAGTGTTTGCTTACCACCTCTTGTTGATGCAGCATGAGAAGAAACACATGGTTAAAGGCCGCCATCAGTGCACACTGTGCAGTATGTCTTACCACCGCCGCTGTCACCTGTACTTGCATGTTAAAAGTCATTTAAAAATCAAAGAATTTATTTGTCAATATTGTGGTAAAGAGTTCTTAAGGCCGAATTCTCTGAAGCGGCACATTGAGGTAAGCCACTGTGAATATAGATTTGTGTGTCCAGTTTGCAAAAAGAAACTAAAGGGTCATCTGACTGAGCATATGCGCACGCATGAGAAGAAGCGTCCACATGTGTGTCCTGAGTGTGGACAACGGTTCACACAGTCCACTCAGCTGAATGTCCACCGCCGCGCACATACTGGGGACAGGCCGTACCCTTGCCGCATATGCAAACGATTTTTTTCGCATTCTAACGCTCTTATGTTGCACATCAGACGTCATACAGGAGAGAAACCTTTTCCATGTGCCATGTGTCCGATGTCCTTCTCTCAATTGCCACACATGAAAACGCACATGCGTAAAATTCATGGTAAGGAGAACCCATACAAATGCGCTAACTGTGATTCCTTTTACAAGCTCAAGGCTCAGCTTGATGTGCATGTGAAGATTTGCGCAGCAGGAGCTACGGTTGATCAGCCAGTGAAAGGTAAAAGGAAAAGGTCCAAGAAGGGAGAGGAAGAGATAGAAGTGGAGTCCGCTATGTCTCTGTCTCGCATGAGGTTCCTGTTGGCTCTTCTCCTCACGATGATCGCTACCAAAGAAAAACTGAAATACCTAGGGTTCAACAAACGCCTCGTAGATGAGATCCTAGTCGAGTCGTTGGAGGCAATGGAGCAGACTCCTTGCAAAGACGAGACTCTCCCGCCGGCCAAGCGTCTAAGGAAAAATATCGAAATGTTCATAAGTGGAACAGTACCCAAAATCCAAATGGATAACTTCAAGAAAGAGAACAAGTCGACTGAGGACATTCTGGAATTGTTGACTACCGAGAAAGATAAGTAA
- Protein Sequence
- MANVKSRLNAPKSASTKKKKKGHKTKKSSAGPKKSPLKRSYTDSNIVMKRPCTRNVMTPDQKIKFLLKNGHKLKQRFIAKPPVNVKPIPEVMVESNPGPRAEPQGCYSKTQDSNLPLMTKNGHLKKKKLCNMKLVDSILKNELMIVERRNTVHTDDAPPTKAPLAVTPLRVGVDNNNDIEITDQNNTSQDYSDDDVCKLSDTISTKSDDITDDENCSDSSKEKSGRKTSKKKKNIYKPRPRHITLKNGVVLKLEYFECDHCNRTFNRKCSLRRHMYVHLGIKPFQCPRCPQQFRSLYNVQVHVHRYHKTSEDDPELFICNFCEKPFLVKENLKKHLETHTDSGSSFKCIYCNKVFAYHLLLMQHEKKHMVKGRHQCTLCSMSYHRRCHLYLHVKSHLKIKEFICQYCGKEFLRPNSLKRHIEVSHCEYRFVCPVCKKKLKGHLTEHMRTHEKKRPHVCPECGQRFTQSTQLNVHRRAHTGDRPYPCRICKRFFSHSNALMLHIRRHTGEKPFPCAMCPMSFSQLPHMKTHMRKIHGKENPYKCANCDSFYKLKAQLDVHVKICAAGATVDQPVKGKRKRSKKGEEEIEVESAMSLSRMRFLLALLLTMIATKEKLKYLGFNKRLVDEILVESLEAMEQTPCKDETLPPAKRLRKNIEMFISGTVPKIQMDNFKKENKSTEDILELLTTEKDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00173494;
- 90% Identity
- iTF_01527647;
- 80% Identity
- -