Tcit044215.1
Basic Information
- Insect
- Tiliacea citrago
- Gene Symbol
- -
- Assembly
- GCA_963921375.1
- Location
- OY992810.1:7915763-7920548[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.31 45 6.2 2.7 1 23 68 91 68 91 0.94 2 14 0.95 1.4e+02 4.7 0.0 2 23 118 140 117 140 0.90 3 14 0.0011 0.17 13.9 0.1 1 23 188 210 188 210 0.98 4 14 0.12 17 7.5 0.8 1 13 215 227 215 229 0.89 5 14 0.031 4.6 9.3 0.6 1 23 314 337 314 337 0.92 6 14 0.62 91 5.2 0.1 2 23 364 386 363 386 0.94 7 14 0.00025 0.037 15.9 0.9 2 23 409 430 408 430 0.97 8 14 6.5e-05 0.0096 17.8 1.6 1 23 434 456 434 456 0.98 9 14 0.79 1.2e+02 4.9 1.3 1 13 461 473 461 474 0.90 10 14 0.0031 0.46 12.5 0.6 2 23 492 514 491 514 0.95 11 14 1.3e-05 0.002 19.9 2.0 2 23 522 544 521 544 0.95 12 14 2.6e-05 0.0038 19.0 4.9 1 23 550 572 550 572 0.97 13 14 2.7e-06 0.0004 22.1 1.1 1 23 578 600 578 600 0.98 14 14 1.2e-05 0.0017 20.1 0.4 1 23 606 629 606 629 0.98
Sequence Information
- Coding Sequence
- ATGAAACCGAAATCTGCAAAagcaaacaacaaaaaaggtGATAGGATTAAAACAGCCTCTAAAAAAAGAAGCAGTCGGAGATCCACAGAAGAGGTTCCTCTTAAAGGTGACAAAATTGAATTAGAAAAGCATTTGCAGAATATCCGCAATATACTCTTACATACTAATGCTACTCCTATCAGAAGACAAACAGCACTTGGTTACCATTGTAGCTTCTGCTTAGAGCACTTTCCCTTACCGAGAGACCTTAAGATACATACACTACAAACCCATGACAATGAAACTAAAAGCACAGTTATGAAAGGCTACACTTTAACGTATTATGCCGTAAAACTAGACATCACTGATCTGAAGTGTGAAATATGCGGTCAAGATATTGACGGATTAGAGCCACTGATGGATCATTTACAATCTGATCACAATCATATTATGCATACAGACATAAAAAATCATATATTGCCTTTTAAATTTCAAGGGGACACGTTCAAGTGCGTGCTATGCCCGAATATGTACGAATGCTTTAAGCTGATACAAGAACACATGAATGTGCACTACAATAATTATATCTGTGAAATCTGCACCTCTCCCTACGTTAATAAGATCACTCTTAACAAACATATAGCGAGACACAAACAAGGAGAGTTCTCTTGCAAGTTTTGTCCAAAAGTATTTGACACAAATGGTCTCGGCTGCGATACAGAAATTAATGTAGAAACAGATGTAAGTAAAATATTGAAAGCAATCAAAGCACCGAGTTCTGCAAAAGCAAACGACAACAAAAGTGATTGGAAGAGTAGCGACCAGGCTTTAGAAAAAGAAATACTAAGAGTTCGGACTCTTAAAACAGACAATAGAGAGATAGACAAACATTTGCAGAATGTTCGTAATATACTCTTTTATTCTAATGCTACTCCTATCAGAAAACAAACAGGGAATGGTTACTTGTGCGGCTTCTGTTCAGAGCACTTTGCCATTCCCAGCGACCTTAAGATACATACATTACAAAAACATGACAACGAAACAAAAAGTAGTTTCATGAAAGGTTGTCCTATCTTTAACTACGTCGTTAAATTGGATATCACTGGTCTGAAGTGTGAAATATGCGAACAAGATATGAACGGGTTAGAGTCACTGATGAATCATTTACAATCTGATCACTATAAAATTGTACATAAAGATATCAAAAGTCACATTTTGTCTTTTAATTTTGAAGGAGATACGTTGCAGTGCGCGCTATGCCCTAAAACGTATGACCACTTTAAGCTGCTACAAGAACACATGAATGTGCACTTCAACAATTTTAACTGTGAAATCTGCTACTCTCCTTTCGTTAATAAGAGAACCCTTAAAAGTCACATGAGGAGACACAAACAAGGAGAGTTCTCTTGTTCGTTTTGTTCGAAAGTATTTGACACAAATGTCAGGAAGTTGTGCCACGAAAAGTTCATACATATTCTTGACcagaaaagaaataaatgtccACAATGCGATGAGAAATTCGTTTCTTACACACAGAGAAATGACCATATGGTAAAAGAGCATGGTGCAGAGCCTCGTGTCCTCAAATGTATGGCCTGTGACAAGACGTTTACTACAAAAGAAAGTTTGACTCGACACACTAAACGGGACCATTTACTTGAAAGGAGACACGAATGCGAGCACTGCGATATGAAgttttatagaaagaaagaactgAATGTACACATGTTAAAACATACGGGCGATAGAAAGTACAGTTGTGATATTTGTTTGAAAGCTTTTGGGCGTAAGGATCATTTAAAAGAGCATTTGAGAATACATGCGGAGGACAGGAAATATAGATGTGAACAGTGTGGACCAGCGTTTGTGCAGAAGGCCAGCTGGAGAAGCCATATGCGGAAGCGACATGATAAGCAGGTTTAG
- Protein Sequence
- MKPKSAKANNKKGDRIKTASKKRSSRRSTEEVPLKGDKIELEKHLQNIRNILLHTNATPIRRQTALGYHCSFCLEHFPLPRDLKIHTLQTHDNETKSTVMKGYTLTYYAVKLDITDLKCEICGQDIDGLEPLMDHLQSDHNHIMHTDIKNHILPFKFQGDTFKCVLCPNMYECFKLIQEHMNVHYNNYICEICTSPYVNKITLNKHIARHKQGEFSCKFCPKVFDTNGLGCDTEINVETDVSKILKAIKAPSSAKANDNKSDWKSSDQALEKEILRVRTLKTDNREIDKHLQNVRNILFYSNATPIRKQTGNGYLCGFCSEHFAIPSDLKIHTLQKHDNETKSSFMKGCPIFNYVVKLDITGLKCEICEQDMNGLESLMNHLQSDHYKIVHKDIKSHILSFNFEGDTLQCALCPKTYDHFKLLQEHMNVHFNNFNCEICYSPFVNKRTLKSHMRRHKQGEFSCSFCSKVFDTNVRKLCHEKFIHILDQKRNKCPQCDEKFVSYTQRNDHMVKEHGAEPRVLKCMACDKTFTTKESLTRHTKRDHLLERRHECEHCDMKFYRKKELNVHMLKHTGDRKYSCDICLKAFGRKDHLKEHLRIHAEDRKYRCEQCGPAFVQKASWRSHMRKRHDKQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -