Tcit035648.1
Basic Information
- Insect
- Tiliacea citrago
- Gene Symbol
- -
- Assembly
- GCA_963921375.1
- Location
- OY992801.1:7113956-7121357[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.034 5 9.2 0.1 5 23 344 362 343 362 0.96 2 12 0.012 1.9 10.6 0.2 3 23 370 390 368 390 0.94 3 12 1 1.6e+02 4.5 0.3 2 23 398 419 397 419 0.91 4 12 2.8e-07 4.2e-05 25.2 1.0 2 23 425 446 425 446 0.98 5 12 0.0028 0.42 12.6 4.3 1 23 452 474 452 474 0.98 6 12 0.00016 0.023 16.6 0.6 1 20 478 497 478 499 0.94 7 12 6.3e-05 0.0093 17.8 0.2 1 23 532 555 532 555 0.96 8 12 0.00087 0.13 14.2 0.1 3 23 564 584 563 584 0.99 9 12 2.8e-05 0.0041 18.9 0.4 1 23 595 617 595 617 0.98 10 12 7.4e-05 0.011 17.6 4.5 1 23 623 645 623 645 0.98 11 12 0.0028 0.41 12.6 0.3 3 23 653 673 651 673 0.98 12 12 6e-06 0.00089 21.0 0.7 1 23 679 702 679 702 0.96
Sequence Information
- Coding Sequence
- ATGGATACTGATGAGCTTCTTCGTATTTTGGAAGGTGTCGATGATGTTGGGATTATCTATGAATCTGCCTCAGATAGAGAAATTGACGAAGAATTAGAGGTCAAGGAAGACGATGGTCTACCGCAGAAACTGTGCACAGATTGTTATGCTATCATGAACTCCGCGTACCAGTTCCGAAAACAGTGCATCAAAATGGACAATGAACTACGTCTACAGCTCAACACTGTATTAGATATATCTACAAGTGATAATCTCTCTAAATATGACCCTAGCGGTGATGACGATATTGGGAATGATCCCATGAAGCAACTTGAGGCTATCATAAAACAAGAGCCCACTGATAGcgatgatgattattattacGTCTTGGTTATTGATGACCCCAAAGATAAAGATAAGGAAGAAACAACAGAAGTGACAAACATTAAACAAGAAGAATTTGAAGATATTGCTACTACTGAGGAGACTACAACTACTTACACACAGGAACCAACCCAAAGCTCTCAGAGTCAGTTTGAAGACTCTATTGAATCGTTTCTCATGTCCAACACCAAAGTCTCAGCTAATGTACCAGCTACAATCCTAGAAAATGAGGAAGAAAGCCAGGAAACTGACGATTTAGACGGAGCCATGAACATAGATGAAACCCAGGACAGTATGTCTCATGACGAAAATTTTGCAGAAATGGAAGAGGGACAAGACAATGAAACCATTGAGACAATTACTTCTGGTGTTATCAATGACCTGCCTAGTTCTAAAAACTTCATCAAAATATTGACTACAACTGACTCTGATGGCACTATCCTGTTGAAAGGTAACGACAGAATCCAATACTTGACTGATTCTCAACTTGTCACAAACGAAGATGAAGATGGAGACGCATTGTCCCAAGAAGTGATTTTCTGTGAAGGTGACGACTCCTCCCAGTTTCAAATCCTGAAATACGATGGTTCAGAATTGGTTATAGAATACGCGGATGATAGCCAAATAGCTACGGTACTCCAACAAGAAGATGGGACATTCTTATGTGATTGTGGAGAGCAGTTCGAAGACTTGGCTGATTATGAGAAGCATCAGTACAAACACAATCCTGCTGGGGAACATTTATGTAACTTGTGCGGTAAAGGATTTGAGTCCGCAGAAATTCTTACTGGACACATGCTACTGCATAGCAGTACAGGGCTCCTAATCACTTGTCCATTCTGCAACCAGCTTATCAGACGCAATGCTTTGACACAGCACATCAAATACGGTCACAACAACATCAAACCTCGCTGCAATATTTGTTTCAAGACATTTGCTAATCCGAACAACTTGAAACGTCACATGATGATTCACAGTGGCATCAGAGAGTTCGAATGTGACATCTGTTTTAAGAGATTCCACCAGAAAATCACAATGCAAACACATAGGTTAACACATATGAACCCATTTTCATGCAACCAGTGTGATCAATCATTTGAGAATAAGACTGCATTGACCAATCACAAAGAATCTGATGACTGTTCAAAATCTAAAGTGATTAAGGTTAAAGAAGAACTAATGAAGACTGTCAAGCAAGAAATAACTACAAATCTTGGTAAACTGCTTGGTTATGCATGTTCGCTATGCAAGAAGATGTTTTCAGTGGAGTCCGCATTAGAGCAACATATTGAGAGCACACACATTGTTGATCCAACAGAATTGTTATGTTCGGAGTGCGGTGAAGTACTGCCATCTAAGAAAGACATGCAAACTCACATACTGACTCACAAGAACATGAAagtgaaaaacataaaaaggtTTGAATGCAGTATTTGTGGCAAAGGGTGTTCGAGCCAAGCTATGCTTTTGATGCATGAACGAGTACATACAAATGAGAGGCCTTTCCCGTGCCAGCTGTGTTCTTTACGTTTTAAAACGAAAACACATTTACGAACTCATCAGCTTACTCATACACGGGAAAAAAAGTTTGGTTGTTCAGTTTGTATGAAGTTTTTTGCCCTCAAAGGAAATTTGGTTGTTCATCTCAGAACACATACAGGGGAGCGCCCTTATGTGTGCTCAATTTGCGGAGAAGCTTTCATAGACTCGAAATACTTGAAGAAACACAAACTAAAGAAACATTCTATAGATAATGTGCCGTGGAATCAGTACTAA
- Protein Sequence
- MDTDELLRILEGVDDVGIIYESASDREIDEELEVKEDDGLPQKLCTDCYAIMNSAYQFRKQCIKMDNELRLQLNTVLDISTSDNLSKYDPSGDDDIGNDPMKQLEAIIKQEPTDSDDDYYYVLVIDDPKDKDKEETTEVTNIKQEEFEDIATTEETTTTYTQEPTQSSQSQFEDSIESFLMSNTKVSANVPATILENEEESQETDDLDGAMNIDETQDSMSHDENFAEMEEGQDNETIETITSGVINDLPSSKNFIKILTTTDSDGTILLKGNDRIQYLTDSQLVTNEDEDGDALSQEVIFCEGDDSSQFQILKYDGSELVIEYADDSQIATVLQQEDGTFLCDCGEQFEDLADYEKHQYKHNPAGEHLCNLCGKGFESAEILTGHMLLHSSTGLLITCPFCNQLIRRNALTQHIKYGHNNIKPRCNICFKTFANPNNLKRHMMIHSGIREFECDICFKRFHQKITMQTHRLTHMNPFSCNQCDQSFENKTALTNHKESDDCSKSKVIKVKEELMKTVKQEITTNLGKLLGYACSLCKKMFSVESALEQHIESTHIVDPTELLCSECGEVLPSKKDMQTHILTHKNMKVKNIKRFECSICGKGCSSQAMLLMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCSICGEAFIDSKYLKKHKLKKHSIDNVPWNQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039097;
- 90% Identity
- iTF_00037092;
- 80% Identity
- -