Tcit042487.1
Basic Information
- Insect
- Tiliacea citrago
- Gene Symbol
- -
- Assembly
- GCA_963921375.1
- Location
- OY992808.1:4141485-4143821[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.01 21 6.7 2.6 18 43 9 31 5 32 0.93 2 22 0.0024 4.9 8.7 0.5 17 44 36 60 32 60 0.85 3 22 0.00097 2 10.0 0.1 18 43 68 90 65 91 0.87 4 22 6.6e-05 0.14 13.7 1.5 17 44 98 122 95 122 0.91 5 22 0.00043 0.87 11.1 1.2 18 44 129 152 127 152 0.94 6 22 7.2e-05 0.15 13.6 1.5 15 43 157 182 154 183 0.89 7 22 0.0041 8.4 8.0 0.5 18 44 189 212 185 212 0.90 8 22 0.0034 7 8.2 0.4 18 43 220 242 214 243 0.85 9 22 1.2 2.4e+03 0.1 0.1 18 43 254 276 249 277 0.77 10 22 0.36 7.3e+02 1.8 0.5 15 43 299 324 283 325 0.76 11 22 6 1.2e+04 -2.2 0.1 18 29 332 343 330 348 0.76 12 22 0.18 3.6e+02 2.7 0.0 15 27 358 370 354 384 0.80 13 22 0.028 57 5.3 3.3 16 43 404 428 395 429 0.86 14 22 0.92 1.9e+03 0.4 9.3 5 29 422 446 420 458 0.72 15 22 0.0036 7.3 8.2 3.2 13 43 459 486 451 487 0.78 16 22 0.066 1.3e+02 4.1 0.8 17 44 492 516 488 516 0.85 17 22 0.49 1e+03 1.3 0.8 18 28 523 533 519 546 0.82 18 22 3 6.1e+03 -1.2 0.7 19 43 554 575 550 576 0.73 19 22 4.6 9.5e+03 -1.8 0.7 38 43 570 575 561 596 0.64 20 22 0.0011 2.2 9.8 4.5 18 43 619 641 604 642 0.82 21 22 3.1 6.3e+03 -1.2 0.1 16 40 660 686 654 692 0.82 22 22 2.2 4.5e+03 -0.8 0.2 11 27 683 701 676 703 0.76
Sequence Information
- Coding Sequence
- ATGTATCAAAATCAATTAGATTTCGTTTGTGACTACTGCTCGAGGActtttacaagaaaatataactTGCAGACTCATATAGAAAACTGTCATATCAATTCTTCATGCCATTGTAATATCTGTGGCCAGAATTTCGGCAGTCCGGCTGGACTGATACAACATTTATCCAGAGGCCATAACAACTATGGCCAGCCCTTTCCAGAATGTGAACTGTGCGGACGAATTTTTACCAGAAAGcagaacataacatcacataTGATAACTGTACATCTACAAGGACTTGGCTACGAGATTCGGTGTCGGTTATGCGAAAAAACGTTCACAACAGAACGGAATTTGAAAAGGCACATCAATCAGTTGCATAATCCTGATGTTGAATATCCTACGTGTAACGATTGCCACAAGGTGTTCAAAGGAAAACACTCGCTCATTGCCCATATACAGTCAGTACATAATGTGAGCGAGAGAGACGCCATCAAATGCCATTTGTGCGAAAAAGTCTACACGAATAACAGGAACCTGAAACGGCACATTGAAATGTTTCATGGCGTAAAAGGAGAGTTTAGATGCGACATCTGCCCAAAAGTATACACTTCGAACCAAAGCTTGAGACGGCATGCAAGAACACGGCATAACACCGACAGCCAGGAACATTTGACATGCAACTTCTGCATGAAAGTTATCATTGGGCGAGAAAATTTCGACAGCCACATACAATTCCACCACCAAGACACCGAAATGTATGGTAGAAACGAATTTGTGTGCGAATCGTGCGATAAAAGTTTCGAAGAAGAGTTTTGTCTGCGGCAACACGTAAAATTAGATCATTCTTTTAAAACCTTCTATAAGTATTGCAAAAAATCGTTGCTCAAACAATACGGGATGGACACGCAAAATATATACAATTGCGAATATTGTGACAATTCTTTTTTAACCGTCTATGAGCTTAAGGATCATATGCGCGTAAACCACGACACTGAGTACTCTTTATCAACCTGCAACGtttgttttaataagttttttagTAAAGACACTATCTCTGTGCATAGGAATGTGTGTCTACCTCCCCCAAACGTAAACACTTGCAGTCACTGCGATAAACTCTTCACTGATATTTCAAGCTTAGAATTTCATACGAGAATTTTTCATCCTCAAGCACAAATCGCTGATTCTAACATTTCATCCACAAACATCGATGAAGAATCTGTTTCGTTCAAGTGTGAGCACTGTGACCGTGTTTATTACAGCGACAGATCCCTAAAACATCATATGAAACTAAAACACACGACAGACAAGGAAGTTGAATGCGAATTGTGTGGAAAAATTTGCAGTAACAAGTATTATTTAGCTTCACATATAAAAATCGTCCATAACAACGACTCTTGGTCGAGATGCGAATACTGTGATAAACAGTTTAAATCAAAGAGAAACATCAGAAGGCATATTGAATACACTCATTTGGGCATGCAACGGTACAAGTGTATTGAATGCGAGAcgttatttaaagaaaaacggAGTTTAAGGAAACATGTTCGAACCAAGCACCCTAACTCGGCGGCCTTTCCTCAATGCCACATATGTCATAAACGATTTGAGTCGGCAAAGTCTTGTAAGATACATCTTAAACTGTTGCATTCTTTCAACATGAACACTTACCCCTGTCATCTGTGTTCTGTATCGTTTAGCTCAAACGAGGCCCTAACTATACATCTAGAGACGAAACATTTAGCCGAAGATCAAATCTACAAATGTGAGGAATGCAACTTAGTTTTTAAAGGGCAGGAAAAGTTTGATGCTCACAACGAGGTATGCCACGTGAATTTATTCCATACTATCAAGCAGAAAGTACTGCCTAGATGCATTCTTTGCATGAAAGATTTTAGCACAAGGAAAACGTTGAAACGGCATATAAAGAAATTCCACGAAGATTTTGATGTGGACGAATTGGCAACTTTTGGGTCGAGACGAAGAACGTTTACAGTTGATTGTGAAGACTGTATCAAAAATTTCAACGATGATTTTCATTTGAGCGTCTTTAATAAGCTAAAGCATTTGAGAGACTCGGAAGTGTTTAAGTGTGGGACTTGTTTCGAGTCCTACAAATCTTTAGAGTTCGCGATACAGAGATACAAGGTGACAAACGCAGATGCTTGTAAAAGCAAAATGATTTTGAGCGAACTTTGTACCGCTGAGATGAGCGAAGAGGAGCATGACTTCTCTAACTTCGGAGCTCTGCATGATATGTTGCCGGAGAGTACCACCGGTGATTTAGATATCAAATTAGAACCTCTTGGTGGTTTAGGGACTGATATTAAGACGGAACCAGCGTCGCCGTAA
- Protein Sequence
- MYQNQLDFVCDYCSRTFTRKYNLQTHIENCHINSSCHCNICGQNFGSPAGLIQHLSRGHNNYGQPFPECELCGRIFTRKQNITSHMITVHLQGLGYEIRCRLCEKTFTTERNLKRHINQLHNPDVEYPTCNDCHKVFKGKHSLIAHIQSVHNVSERDAIKCHLCEKVYTNNRNLKRHIEMFHGVKGEFRCDICPKVYTSNQSLRRHARTRHNTDSQEHLTCNFCMKVIIGRENFDSHIQFHHQDTEMYGRNEFVCESCDKSFEEEFCLRQHVKLDHSFKTFYKYCKKSLLKQYGMDTQNIYNCEYCDNSFLTVYELKDHMRVNHDTEYSLSTCNVCFNKFFSKDTISVHRNVCLPPPNVNTCSHCDKLFTDISSLEFHTRIFHPQAQIADSNISSTNIDEESVSFKCEHCDRVYYSDRSLKHHMKLKHTTDKEVECELCGKICSNKYYLASHIKIVHNNDSWSRCEYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSAAFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCHLCSVSFSSNEALTIHLETKHLAEDQIYKCEECNLVFKGQEKFDAHNEVCHVNLFHTIKQKVLPRCILCMKDFSTRKTLKRHIKKFHEDFDVDELATFGSRRRTFTVDCEDCIKNFNDDFHLSVFNKLKHLRDSEVFKCGTCFESYKSLEFAIQRYKVTNADACKSKMILSELCTAEMSEEEHDFSNFGALHDMLPESTTGDLDIKLEPLGGLGTDIKTEPASP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00447464;
- 90% Identity
- iTF_00072251;
- 80% Identity
- iTF_01441295;