Tcit017748.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tiliacea citrago
Gene Symbol
-
Assembly
GCA_963921375.1
Location
OY992787.1:28119186-28128683[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.4e-09 8.5e-07 30.0 0.1 4 42 404 442 402 444 0.89

Sequence Information

Coding Sequence
ATGAATAGGCTAGCAGAACAACGAGCTAGTAAAAATTTTGGGAAATTTTGGAAGTCCACTGGTAAATTGAATGCGAAACCTGGCCTCTCTGCGTGTGTGGAAGGGATAAGTGATaagaaggaaattgctaatgaGTTCAGGGACCATTTCAAAGTTCAGTCTCCTCTGGGTCCCTCAACCTTGGTGAATGATTGTGAGCCCATCAGTCCTGGCGCGAAACCTCTGATACGTTTCTCGAGCAAGCAGGTACTTGCAATCATTAACAACATGAAACGAGGCAAATCTCCAGGGCATGATGGGCTCAGCATTGAGCACCTGAAGCACGCAGGTGTACATTTGCCGAGAGTCTTGTCTATGTTTTTCACAATGTGTATTAGTCACGCGTACCTACCGGCGAATCTAATGAAGACCATCGTAGTTCCCATTGTGAAGAACAGGACAGGTGACATCTCGGACAGAGTCGCACTCAGCAGCATGCGTGTCGGATGCAGTGTTGATGGGGTTAGAATTAACAACATCAGctatgcagatgacatggtgctgctgggtccGTCAGCGGGAGCAATCAGGGAGATGCTTAGAACGTGTGAGACCTACGCTGCCGCACATGGATTGAAATATAATGAAAAGAAATGTGAATACATGGTCTTTGAGGTCAGCGGCAAACGCCGTGGAGAGGGACCCGAGTTGCTTATTAACGGGTCACCAATTAATAGGGTGTCAACttttaaatacctagggcatTGTCTTGCCGCTGACCTCAGGGACGATGtagatattgagagggagcgcagggctctAGCGGTCCGGAGTAATATGTTGTCCCGTAGATTTGCGCGGTGTACAGACCAAGTTAAAGTAACACTTTTTAAGGCTTACTGCCAAAGTTTGTACACGGGCAATCTATGGGTCAATTATACTAAGAGATCGCTGGATgccctgcgcgtccaatataacaatgcttTCAGGGTGTTGTTGAGGCTGCCTCGATACTGTAGCGCGTCGAATATGTTTGCGCAAGCCCGCACCGACGGCTTCGGTGCTATTGTGCGCAAAAAAACTGCGTCGCTTCTGAGGAGAGTGAGGGGCGGTCaaaacagcatcctgaaaactgTAGCCGAGAGCTTCGGCTCTCCGATTATGCAGCAGTTTGTGCGGAGATGTTATCTgcactacgaaaaaaaaaaagaaaaaagatatgAACAAAGCACTCTTGAAGAAGCTGTACGGATGGTACAAGCGCAGCAGATATCTCTGTCCAAAGCCAGTGTTCAATTTAACATTCCAAAGGGTACACTTCACAATAAAATTCACAGGAAAACGGCCCTCCAATGTAAAAAAGGGCCGGGAAAACTATTATCGGatgaagaagaaaataaaattgctaCCTGGATTTTAAATATGGCCAAAATTGGGTACCTtgtcaacacaaatgatgtcaGGGAAACTGTTGCACAGATTTTTGAAATTAATGGTTCCGACCTGAAGCCGGGCAAAAAGTGGATGAAACTGTTTTTGCAAAGGCACCCTAACATCACAAAAAGACATGCAGAAATAATTTCGAAAGCAAGAGCTTTAGTTACAGAGCCAATGATTAGGAAATGGTTTGAAGGTTTGCGACAACATCTTCAAGAGGTATGTGCTGATGATATATTAGACAATCCCGAGCGAACTTTTAATCTGGACGAGACTGGTGTACAGCTGTGCCCGAAAACTGGAGTTATTTTGGCACCTAAAAACTATCGTGCGATGTATGATGTGGCATTAGGACAGGAAAAACAAAGTATTACTGTGTTATGCAACTTTTCTGCTAGCGGTGGAATAGTTACACCATTTATTGTATACCCCTTGCAAAGAATTTCAAAAGAAGTAGCTCAATCAGTTCCAGATGACTGGGGAATTGGAAGATCAGATTCAGGTTGGATGACAGGTCAAACGTTCTTGCACTATATCAAAGAAATCTATCTGCCTTGGCTccagaaaaataatattccaCTTCCGGCACTTCTGCTTGTGGTTGGCCACAAAAGTCACATAAATTTGGAGTTGCACGAATTTTGTGCTCAAAGCCAAATTATTCTCTATTGCCTGCATCCCAATACGACACATATCCTACAACCCTGCGATGTAGGAATCTTTGGACCTCTGAAAGCAGCATGGAAAAATGCAGcaagaaaacacaaaaataaagatAACGTTGAGATTACGAGGTCAAACTTTGCAAAAGTATTTGCACAGTCTTTTGATGTGTCTATGAAgaaaaccgtgatagttaatgCATTCAAAGCATGTGGAACTTTCCCATTTAACCCTAATGCTGTGGATTATTCAAAATGCATGTCGAATAGACAAGAAGAAATCGAACATGATATACCTTTAAGtgattataaaacaactgttgacgtaatcgaaaaaaatttacacaaaaatatactGGACAAGTACAATGAATACAGAAGACGCAATAAGACATGTAAGAGTAGTCTTTTCAAATTTTGCAACAAGTGCAAAAATAAAGTGGACAACATCTTGTTATCACAATCGTCCAATATTGATGATTCTGTAATAAACAGTTCGAGAATAGATAATTCTAACACGGACATGCACGCAAGCAATACAGGAGAGATATTAATGCCTCAAGAACAGCGTCAAGAAGGAGAATTATCAATTACTCATAAAACACAGCTTGGAGAAGGAGATTTGACTCTTGGGACAAATACTATCAATGATGGCATTATGGATATAGAAAATATGCCAATTGAAATAGAAGGAGTGACTTTTCTAATGGACGAGGTATTAGAAGACACGAACGAGAACCGTTTGACACCAAGTATAGGAATAGCACCTGGTGGCAATCAACAAGATGTTATAGAATTTCTGGAACCCCACGCATACACAACACATTTGCATGATTTGACAAACACTGCAACTTTTGCTCATTGGGGTGCGCCTCAAACAACTTCTACGCCTGTTTCATCAAAGCAAGCAATTCCATTGCCTTGGTACAATGAAGGTGATGATACTGTACTGAATATATCGCAGTGTTTGAGAAAGAAAGCCAGCAAATTGGACAGCTTGATATATTTCGTTGAGCCTTCTACTACTGATTTAACTGAAGTGTCGACATCAGCTATTAAAAATCTTTTGTCGTGTCCTCGAATTGGAAGAAGAGATACGAATTATTCGCTGTACAAAGCAACCAGAACCTTAAAGAAACCTAAAGCTCAAATAACTCCTATTAGAGATAACATAGGAGGGTGGGCAAGTTCAGATAACGAGAAGATAGAGCGAGAAATAAGAAATCTCAAGGAAGGAAAAGCACCAGGTTGCGATCTTGTCGACGCAACCCTCTTGAAACATCTACCACACAAGGGTATCATGAGCTTAGTCAAGATCATCAATGCCGGCATCCGCCTTGAACACAGGAAAAATTGCTCAAGTCGTAATGGTGCCTAA
Protein Sequence
MNRLAEQRASKNFGKFWKSTGKLNAKPGLSACVEGISDKKEIANEFRDHFKVQSPLGPSTLVNDCEPISPGAKPLIRFSSKQVLAIINNMKRGKSPGHDGLSIEHLKHAGVHLPRVLSMFFTMCISHAYLPANLMKTIVVPIVKNRTGDISDRVALSSMRVGCSVDGVRINNISYADDMVLLGPSAGAIREMLRTCETYAAAHGLKYNEKKCEYMVFEVSGKRRGEGPELLINGSPINRVSTFKYLGHCLAADLRDDVDIERERRALAVRSNMLSRRFARCTDQVKVTLFKAYCQSLYTGNLWVNYTKRSLDALRVQYNNAFRVLLRLPRYCSASNMFAQARTDGFGAIVRKKTASLLRRVRGGQNSILKTVAESFGSPIMQQFVRRCYLHYEKKKEKRYEQSTLEEAVRMVQAQQISLSKASVQFNIPKGTLHNKIHRKTALQCKKGPGKLLSDEEENKIATWILNMAKIGYLVNTNDVRETVAQIFEINGSDLKPGKKWMKLFLQRHPNITKRHAEIISKARALVTEPMIRKWFEGLRQHLQEVCADDILDNPERTFNLDETGVQLCPKTGVILAPKNYRAMYDVALGQEKQSITVLCNFSASGGIVTPFIVYPLQRISKEVAQSVPDDWGIGRSDSGWMTGQTFLHYIKEIYLPWLQKNNIPLPALLLVVGHKSHINLELHEFCAQSQIILYCLHPNTTHILQPCDVGIFGPLKAAWKNAARKHKNKDNVEITRSNFAKVFAQSFDVSMKKTVIVNAFKACGTFPFNPNAVDYSKCMSNRQEEIEHDIPLSDYKTTVDVIEKNLHKNILDKYNEYRRRNKTCKSSLFKFCNKCKNKVDNILLSQSSNIDDSVINSSRIDNSNTDMHASNTGEILMPQEQRQEGELSITHKTQLGEGDLTLGTNTINDGIMDIENMPIEIEGVTFLMDEVLEDTNENRLTPSIGIAPGGNQQDVIEFLEPHAYTTHLHDLTNTATFAHWGAPQTTSTPVSSKQAIPLPWYNEGDDTVLNISQCLRKKASKLDSLIYFVEPSTTDLTEVSTSAIKNLLSCPRIGRRDTNYSLYKATRTLKKPKAQITPIRDNIGGWASSDNEKIEREIRNLKEGKAPGCDLVDATLLKHLPHKGIMSLVKIINAGIRLEHRKNCSSRNGA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-