Tcit018966.1
Basic Information
- Insect
- Tiliacea citrago
- Gene Symbol
- -
- Assembly
- GCA_963921375.1
- Location
- OY992788.1:24693900-24695576[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-10 9.5e-08 33.1 0.0 1 39 18 56 18 61 0.93
Sequence Information
- Coding Sequence
- ATGGTGCGAAACTACAAGAAGACGCCGGGTACCCGACACTACAGGAACTATACGGATGAAACCCTCGAAGAAGCTCTGCAAAAAGTTGCAGATGGGGATTTGAGCATCAACGCAGCGTCGGTAAGTTATAAAATACCATTCGGTACtttatacaatagatataaGGGAATGCATGGATCAACTCCTGGAGGGCAACCTGTATTTACATATGTTGAGGAAGTTGCAATTTTAAAAGCCGCCGCAACTTGTGCCGATTGGGGATTTCCACTCACCAGTTTTGATTTACGAATGCTTGCAAAATCATATTTAGAACAGCATGGAAGATATGAGGCTaaatttacaaataacattCTTGGCATTGATTGGGCGATGAGTGTCCTAAAACGCCACAATAATGGATATGGTCAAAGAGTTGCCACCACTATAAAAAGAGCAAGGGCTGCAGTAAGCCGGGATTCGATCAACGCCTACTTTGATAATCTTGAAAATGTTATGGAAAACGTACCACCGTCGAACATATTTAATTATGACATTTGCATTTACAGGCGCGGTGTAAAATACCCCGAAAAGGTGATGAACCACTCGAAGAGTTGTACTAGTATTATGATTTGTGGATCTGCCGATGGGACTTTACTGCCACCATATGTAATCTACAAGAGCATGCACTTATACGATACGTGGAAAGAAAGAGGCATAGCTGGATATCCTTGCTGTCAGCAGCCATGTTGCAGTCGTGGCAGCAGATATAATAGGACTGCAAGCGGGTGGATAGACGCTTCAACCTTTAGAGACTGGTTTATGACCTGTTTCTTACCTCACGCTAATAGACTCGAAGGCCAAAAAGTGTTAATTGGACACAATTTGTCGTCACATTTAGATTCTGACGTATTAGAAACATGCCAATCACATAACATCAGTTTTGTATGTCTTGTGCGAAACTCTACGCATATCTGTCAACCTTTGGATGTTAGTTTTTTTCGGCCTATGAAAGCCGCTTGGAGAAAGACCCTCGAACAATGGAAGCTTAGTAACCCCAAAGCTTCAGCTGTACCAAAGGACGTTTTCCCACGACTTCTGAGAGAAAAATTAACAGAAATGGACAAAGTTCGAACTCCTGGTGACGCCAATGAAGAGTTCACATCTGCTATTAGAATAAATTTGATCAGTGGCTTCAATGCAACGGGAATTTATCCTTTGAATAGAGCaaaagttttaaacaaaatccCTGCATCTCAAAACGAAGCAGAAGTAACTGTGGCTGTGAGGGATTCATTGACTGATTTTTTGAAAGAACAACGTTTTGCCAAAGATTCTGAACCAACtcgtaaaaaaaaacgtctAGCCGTTGAGCCAGGAAAGATCATTTCAACTATCGATGAGCCTGAACCTTCGACATCCACTGCCGAGGCTGAACCTTTGACATTTTCACCCATTAATGAACCAGGTATCGGCGAAATCATTTTGGAAGATAGCATAAACCAGCGATATTTGCGCCAAAGCGTTCTAGATAACGACGATGATGCAACAGACTGCGAGTCGGTTGCAGATGACCAAAGAACACAAAGTGATAATGTTAGGCAAGGTCCAGAAACTGGTGAATTTATTTTGGCAAAATTCAACTCagccaaaggaaaaaaaacttatcaGTATGTTTGCATGGTTGAAGAAAATGTCTGA
- Protein Sequence
- MVRNYKKTPGTRHYRNYTDETLEEALQKVADGDLSINAASVSYKIPFGTLYNRYKGMHGSTPGGQPVFTYVEEVAILKAAATCADWGFPLTSFDLRMLAKSYLEQHGRYEAKFTNNILGIDWAMSVLKRHNNGYGQRVATTIKRARAAVSRDSINAYFDNLENVMENVPPSNIFNYDICIYRRGVKYPEKVMNHSKSCTSIMICGSADGTLLPPYVIYKSMHLYDTWKERGIAGYPCCQQPCCSRGSRYNRTASGWIDASTFRDWFMTCFLPHANRLEGQKVLIGHNLSSHLDSDVLETCQSHNISFVCLVRNSTHICQPLDVSFFRPMKAAWRKTLEQWKLSNPKASAVPKDVFPRLLREKLTEMDKVRTPGDANEEFTSAIRINLISGFNATGIYPLNRAKVLNKIPASQNEAEVTVAVRDSLTDFLKEQRFAKDSEPTRKKKRLAVEPGKIISTIDEPEPSTSTAEAEPLTFSPINEPGIGEIILEDSINQRYLRQSVLDNDDDATDCESVADDQRTQSDNVRQGPETGEFILAKFNSAKGKKTYQYVCMVEENV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01264394; iTF_00726247; iTF_01533864; iTF_00071341; iTF_00111565; iTF_01264397; iTF_00071342; iTF_00111566; iTF_01264398; iTF_01264399; iTF_01264400; iTF_01527024; iTF_01119250; iTF_01264370; iTF_01119251; iTF_00622743; iTF_01525881; iTF_00973698; iTF_00973704;
- 90% Identity
- iTF_00726247;
- 80% Identity
- -