Tcit010263.1
Basic Information
- Insect
- Tiliacea citrago
- Gene Symbol
- -
- Assembly
- GCA_963921375.1
- Location
- OY992783.1:5810632-5811924[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-10 2.3e-07 31.9 0.0 3 37 17 51 15 58 0.92 2 2 2.9 1.7e+03 0.3 0.0 22 30 142 150 127 151 0.75
Sequence Information
- Coding Sequence
- ATGTCTCGGAAGTATGAAAGAACGACACTACGAGCATCATGGAGTGCGGACGACTTAGACAAAGCCATGCGTAGTGTCCTAAGCAAAGTAATGGGTGTTAATGAGGCATCCAGAAACTTTGGGATACCGTCTCGAACTTTAAGAAGACACattttatcaggaaattcaaagGGCCCTCTAGGACGCAAACCAGTATTTTCTGTacaatatgaaaaaaaactggttgctcatataaaaaaattggaaaaagtTGGATTTGCCCCTGACAGAAAAGATGTAAAAGAAATGGCATTTCAACTAGCCAAGAAACTCGATATTAAAAACCCATTTTCAACAAGCTCAGAGTCAGCTGGAAATGTATGGTTTTCGGGATTCATGGCTCGCAACTCTGAATTAAGtcaaagaaaatcagaaggttTGTCACTTGCTCGAGCTTATGGAGTTAATAGAAAAGATGTACAGGATTTTTTTGATTTACTAGCCAAAATCTACGAAGAAAATGATTTTGCAAATCACCCCGAAGATATTTTCAACATGGACGAGTCCGGCATACAGGTGAATAACAAGCCAGGAAGAGTAATTGCCACAAAGGGAGCCAAAGATGTCTACACGCTCACGAGCTCTGAAAAGGGTGAAAACGTAACGGTGATTGCTTGTTGTAATGCTCAAGGTAACTTTCTTCCCCCTGTCTTAATATATAAGGGTACTTACAGCAAACCACAATTTTCCGAAGGTCTTCCTCCAGGATCACAGGTTTTCATGAACAAAAAATCTTCTTATATAAATACAGATCTCTTCATGCAGTGGTTTGAAGAAGTGTTTCTGCGTCACAACAGTTCTCGAAAAACATTGTTAATATTAGATGGTCACAGCTCGCACAGTAACAATATTCGCCTACTGGAAGTGGCCAAAGAAAATGTACCAAGACACACTACGCATGCTCTGCAGCCTCTTGATAGAGCCTTTTTTAGGCCATTGAAGGTATACTTTGCCCAAGAAGCGAAGACATGGATGGTCAGGAACAAAGAGAAGAAGTTGACACGCTGTGACGTGTCTAAGTTAATCGGACGAGCTTGGGGCAAAGCTGTCACTGTTTCCAACGGTGTGTCAGCTTTAAAATCATGTGGAATTTATCCTTTTGATCAGAGTGCCATTCCGGATCACTATTTTTCACTATCTGATTCGCTGCGAGACCAAAATTTAGTTGTTGAAGATGAGGATGGGACGTCAAGAGAGTCTCTGTCATTACTTCATGAATATGACGACAGTGCCTTTGATACAATCCATTCCTAA
- Protein Sequence
- MSRKYERTTLRASWSADDLDKAMRSVLSKVMGVNEASRNFGIPSRTLRRHILSGNSKGPLGRKPVFSVQYEKKLVAHIKKLEKVGFAPDRKDVKEMAFQLAKKLDIKNPFSTSSESAGNVWFSGFMARNSELSQRKSEGLSLARAYGVNRKDVQDFFDLLAKIYEENDFANHPEDIFNMDESGIQVNNKPGRVIATKGAKDVYTLTSSEKGENVTVIACCNAQGNFLPPVLIYKGTYSKPQFSEGLPPGSQVFMNKKSSYINTDLFMQWFEEVFLRHNSSRKTLLILDGHSSHSNNIRLLEVAKENVPRHTTHALQPLDRAFFRPLKVYFAQEAKTWMVRNKEKKLTRCDVSKLIGRAWGKAVTVSNGVSALKSCGIYPFDQSAIPDHYFSLSDSLRDQNLVVEDEDGTSRESLSLLHEYDDSAFDTIHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01424988;
- 90% Identity
- iTF_00071329; iTF_01424988;
- 80% Identity
- -