Taur025105.1
Basic Information
- Insect
- Tiliacea aurago
- Gene Symbol
- -
- Assembly
- GCA_948098905.1
- Location
- OX402606.1:5063682-5078546[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.6 5.5e+02 2.0 0.7 5 20 262 277 261 278 0.91 2 13 0.0017 0.15 13.2 0.3 1 23 290 313 290 313 0.91 3 13 0.008 0.67 11.2 0.2 2 21 351 370 350 371 0.94 4 13 1.1 94 4.4 1.5 1 20 659 677 659 678 0.86 5 13 0.24 20 6.5 4.3 1 23 691 713 691 713 0.96 6 13 0.0072 0.6 11.3 0.4 2 23 719 740 718 740 0.95 7 13 0.92 77 4.7 2.6 1 19 763 780 763 784 0.72 8 13 0.00078 0.065 14.3 0.2 2 23 861 882 860 882 0.97 9 13 4.9e-07 4.1e-05 24.4 2.7 1 23 888 910 888 910 0.99 10 13 2.8e-05 0.0024 18.9 0.5 2 23 916 937 915 937 0.96 11 13 0.00011 0.0096 17.0 1.2 2 23 944 966 943 966 0.94 12 13 2.3 2e+02 3.4 0.2 1 20 973 992 973 992 0.80 13 13 0.0019 0.16 13.1 0.2 3 23 1005 1026 1004 1026 0.96
Sequence Information
- Coding Sequence
- ATGAAAATACCTAAAATCGTGAAACAGACCAGCAGCAGACAACCAACAAAAAAGGTGATATTAAAACCGCCAGAGCCCACCATTATCGAAGAAGAGATCTGCGATACAAGTGTCCTAAAAAAAATCAACGCATCAGCTAAAGAAGACATTGAGCTACAATCTAAGATATCGCCACGAAAATTCGAAATTAACATTGAAGTAGAATCTTGCGGTGACGACGACGAATTCGGAGGAATTGATGAAGAAAATCATTTATCAACGATTCATACAGAGTCACTCATCGCGACAAAAATACAAACCAAACCTATAGAACTCTCTCGTGAAATTGTAATAGATGCAGCCGACAACATACTCCAGACTTCAACAGATATTGCTGATAAAGTCCTTAATATATACGTCAGAAATACTATAGGTTATGAAGAGAAGGTGAATCTGGTGCTACATTGGCAGGAGAGGATAATACAACAGGTTTTAGATGAATGGCGTTCGTGGCAGTTCCGTAGTTTTCACAGAGAAGACCCTGTATTCTACAAATGCTATATCTGTATGAGGTCCTGGTGGCATTTAACAGATTTACGCAATCATTTGTCTTCGGAACATGCTGATGATTTAACGGTTATAATTGCTTTGGAAAAATATGGAATACATGAAGCCAATTTGGTAGTGTACCATCGAAGGCAAAGAAAGGATATATATACAGAAGGCCTATGTTACCGCTGCGGTAAAGATTATGGTGCTCATGAGTTAGAATCGAGGTTCCAAGAGAAATATTACAAAAACAAGGGTTGCACTAAGAAATTTTTCAGCTGTATGGGTCTAAGGGACCACTATTCTTGTTGTCATGTCTGTAAGTATCGGGATATACCATTCAATTGTGATATATGTAAGTCAAGATTTAATACAGCCGAGGAATTAACCAACCATTTAGTATTGTCTCATTCGGTCCGGTCGGATATTCCAATAATGGCTCACTATAAAACATGCAAGCACTGTTCGGAAAGGTATTCCTGTCAATATTTGCACAAATGCGGACAAAAGAGACCTCATAGCGAGTGTCCGCACTGCTTACAGAACTTCTCAAATGTCATGTCTTTGGAAATACATATGCAACGGTCCAGTAAGCCATACGAATGTGAAGTTTGCCGAGCTGTGATGATGAATAGCTGTATGAAATATGAACATATGTTGGCGCATACAGACAACTATATGATTGTTAGGAAATGCTTGACATGTGAGGGTTTGAACGTGTTTATAAATAAAGAGGATGCCGTAGTACATCGGTCGTTGAAACATAACTTGAGGGAAATGAAACATCAATGCGATTTTCCTAAAATTTTAGTACCGTCGTCCTGCATATATCAAAGTTTAGCAGAATCAGAATTGAAAGAACAAGAATCGTTACTGGAAGAACAAGAATCAGAACTAGATGAACAAGAATCCGAATCAGAAGGATCTTTACCTGAAGAAGAAGAATACGTACCGGAAGAAAAAGAATCGCTACCGAAAGAAGAATCGGTATCAGTATGCGAACAGAAATTGTTACAAGCAGAGCTAGAATCAGCAACAGAATTTTTATTGGGAACTGTTGCATTCAAAGAAGAGCCAGAAGATTCAGAAGGTAGCCCAAGACTAATAATCAAAGAAGAACCATTAGAAGAATTTGAAAATCAAATGCATGAAGAAGAACATCGAACCGAGAATTTTGAACACAAAGTAAGTGTCAAGGAAGAATACGTCGAGGAAGAGTTCGATGAATACGAAGGAGATATAATCAAACTGAACTTCAATATAGAAGACTTATTAGTGAAACAAGAATCCATTCAAGAAGATGACGATTATACTTTAGAGCAGACAGAAAATAATCAAGAATCAGAAGATAATGATGATTCAGAAGAATTCCCACAACAATTGAAAGACTCCATGCTAGAACCAGAGGTTATCATAGAAGGGAGTGAAGGAAAAAAAAAGAAAAAATACAGATGTACTAAATGTGGATTCACAGCAAATCATAAACAATATAGAAGTCACATAGACTTTGACTGCGGTACAAACCCCATAAGACATAAATCCTACACTTGCACAAAATGTAACAAAAAATATGGATCCATGAAAAAGTATTTGACACATTTCAAAGAGCACGGATACCAACACCTTTCTTGCCCCGACTGCTTGAAGGAATTTGACACATTCACAAATTTGGGGCAGCATTTAACACAACATGTAAAGCAAAATTTTGTTCGCGTTAAAATGATCACACATGCTGGCAAGGCAATGACAAAACCAAATTATCAATGCAAAAAATGTGGAAAAGTCATACATTTTCAGAAGTTTTTTGAACATTGGGAGCTGCATATAAATGCTCAGCCAACACATCCGATTAAAGTGACTTCGAGGGCTAAGCATACGTATGGAGAATTGTATGGAACTATTATAAAGGAGTGCATTGCCCGCTTATACAAGCAGCCGAAGAGCTGCAACCACTGCCACCGTTGGTTCAAACGAGTCAACGAATGCAAAAGACACATCATTGAACATCTACTAACTGATGCATACACGCAGAAGCACATCTATAATGAACTGAAATGCCAAATCTGTGAACAAGGATTCGCAGTACCGGAGAAATACAAACAACACATGCGAGACCATGCATCTCTACCTGTGTACAAGTGTGAACTGTGTGATCGTACCTTTAGTGACTCGAGTAATTTTACCAAACATAAAAAAGTGCATAATTTGAAAGTGACTGTTTGTGATCTGTGCGGTAAAAAGTTCCAGTCGAAAATGTCTTTGGAGAAACATATTGAGATGCACAAAAACACAGAGCCAATACCCTGCAATATTTGCAACAAAACCTTTTACTTCGAATCGTCTTATCGTCGCCATGTAAAATATTTTCACGAAAAAACCGTTGTTGGATTCCGCTGCGCAAATTGCAGTGAAAGATTCGACAGTGTCAAATTAAAATGGGACCATATGTGGGAAGTACATAAGGAGAGGAAGCAAAAAGCAGACTGCCCTATATGCCAACTATCGTTCAGGAAGTACGCCGATGTCCGTCGGCATGCCAGGCTAAGCCACATGACAGACGTCTCAGTGTTAAATGTAAAAAAAAATGCAACAAAATCCAATTTAGATATTGATACTTGTTTAAGGGATCCTGCTAAGATTAAAGTGGGGAAGTTGGAGACTTTGGTTGTGTATGATTCAGATTGA
- Protein Sequence
- MKIPKIVKQTSSRQPTKKVILKPPEPTIIEEEICDTSVLKKINASAKEDIELQSKISPRKFEINIEVESCGDDDEFGGIDEENHLSTIHTESLIATKIQTKPIELSREIVIDAADNILQTSTDIADKVLNIYVRNTIGYEEKVNLVLHWQERIIQQVLDEWRSWQFRSFHREDPVFYKCYICMRSWWHLTDLRNHLSSEHADDLTVIIALEKYGIHEANLVVYHRRQRKDIYTEGLCYRCGKDYGAHELESRFQEKYYKNKGCTKKFFSCMGLRDHYSCCHVCKYRDIPFNCDICKSRFNTAEELTNHLVLSHSVRSDIPIMAHYKTCKHCSERYSCQYLHKCGQKRPHSECPHCLQNFSNVMSLEIHMQRSSKPYECEVCRAVMMNSCMKYEHMLAHTDNYMIVRKCLTCEGLNVFINKEDAVVHRSLKHNLREMKHQCDFPKILVPSSCIYQSLAESELKEQESLLEEQESELDEQESESEGSLPEEEEYVPEEKESLPKEESVSVCEQKLLQAELESATEFLLGTVAFKEEPEDSEGSPRLIIKEEPLEEFENQMHEEEHRTENFEHKVSVKEEYVEEEFDEYEGDIIKLNFNIEDLLVKQESIQEDDDYTLEQTENNQESEDNDDSEEFPQQLKDSMLEPEVIIEGSEGKKKKKYRCTKCGFTANHKQYRSHIDFDCGTNPIRHKSYTCTKCNKKYGSMKKYLTHFKEHGYQHLSCPDCLKEFDTFTNLGQHLTQHVKQNFVRVKMITHAGKAMTKPNYQCKKCGKVIHFQKFFEHWELHINAQPTHPIKVTSRAKHTYGELYGTIIKECIARLYKQPKSCNHCHRWFKRVNECKRHIIEHLLTDAYTQKHIYNELKCQICEQGFAVPEKYKQHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLKVTVCDLCGKKFQSKMSLEKHIEMHKNTEPIPCNICNKTFYFESSYRRHVKYFHEKTVVGFRCANCSERFDSVKLKWDHMWEVHKERKQKADCPICQLSFRKYADVRRHARLSHMTDVSVLNVKKNATKSNLDIDTCLRDPAKIKVGKLETLVVYDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01441536;
- 90% Identity
- -
- 80% Identity
- -