Taur018623.1
Basic Information
- Insect
- Tiliacea aurago
- Gene Symbol
- -
- Assembly
- GCA_948098905.1
- Location
- OX402583.1:21688100-21704645[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.41 34 5.8 0.2 6 23 228 245 226 245 0.94 2 10 5.4 4.5e+02 2.3 0.0 3 23 253 273 251 273 0.91 3 10 1 86 4.5 3.5 2 23 312 333 312 333 0.96 4 10 0.0017 0.14 13.3 1.0 1 23 338 360 338 360 0.93 5 10 2e-05 0.0017 19.3 0.9 3 23 368 389 366 389 0.95 6 10 0.00012 0.01 16.9 1.7 2 21 396 415 395 416 0.94 7 10 1.5e-05 0.0013 19.7 0.6 2 23 425 446 424 446 0.96 8 10 2.8e-05 0.0024 18.9 2.4 3 23 454 474 452 474 0.97 9 10 1.1e-05 0.00088 20.2 2.5 2 23 480 501 480 501 0.96 10 10 0.21 18 6.7 1.5 1 23 507 532 507 532 0.93
Sequence Information
- Coding Sequence
- ATGTCTTTATTTTGTCAAAGGGATAAAACTATTAAAATTCGTATGTGTCGAATATGTCTTGATGCAAATAAAGTTGACATGGTGTTAATAGAAGAGCAGAATGGATGGTTGAAACTTTTCGAGTCTTGCTTTGGATTTACTTTAACTACGCAAGACGAACCACGTTTGCTGTGCAAAATATGTGCCGAAAAGGTCCAAACATATGTTAAGTTCAAGGAGAAATGCCATAAATCCCATAGTCTTTGGAAATCTGTAATTTCTGATGTGAAATGTTACATAGTTAAACATCAAAACAACGAAAATACCAATGAAAATTCCAATGATCCTATTACAAGTAAAACAGAAATTAAAGATGAACCATTTGATCCGTTTTTTGATAGTGATGTTAATTATTCTAATGAAGATGACAATGAAGTAGTAATTAATTTGTCACCTACTGAAATTAAAGTTGAGTCTCGAGATGAATATGATACCAAATCAAGGGATGATGGGACTAGTAACAACAAAAAGAAGGATTCTCTTAGAAATACAGTTAATTCAACACAGAACTGCAAAAATAGTAACAGTAAGGGCAGTATAAAAAAGAAGAAAGTATGCTATCTCAAACACATTAAAGTATGTCAAACCAAAATACCAAAAAGGCGGATTTTCGGTCAAGATTATGCTTACAACTTGGGTCTCTGTAACCTCAGTTTCACCACAATTAAAGATGTTTGCATACACTTGAAGGATCATTGGACAAATAATGATTTAGCGTGCAAATTGTGTGATTTCGTAGGCGTCGACCTGGCTGCTATTGCTGCACATAGGTTTTCGCACTTTCCGCGCAAAGATACAATGCGATTTTTATGCCACATTTGCGAAAAGAATAAACAATCATTGTTGGCGTTGCATTTTCACTATCGAAAGGAGCATTTGAAGAAGTCCGGAGGGTATTGCTCGAGGTGCCATACGGAATACAACAAATTGCGATACTGGAAGAAACATGAGTTGAGTCACTGTGCTCCTAAGCATATATGTGATATTTGTGGAAAAGGGTTTTATTATAAACATGCTATTAAAGAACACGTTATAGATCATATGCAGCTAAATAAGAGCATTTGTGACATCTGCGGAAAAACATTCACCCGCCGAAGATATATGAAGTTACACAAAGAAACAGTTCACAGTAAATCGGGACCATTAGAATGTACTCACTGCAACCGAACATTTAAGAGTGAGTTCTCTTTAATCCAACATCAGAAGAATATGGTTACCAGGGAGAAAACCTTAAAATGTGAGGTGTGTCATAAGGCCTTTATCACGCCAAATAAGTTGAAGTTGCATATGGTGGTGCATAGCGATGAACGGCCCTATGGCTGTAATATTTGTGGCTGCAGTTACAAATATAAATCCCAGCTGACGGATCACCAGCTGAAGCACTATGGGATTTTGCCACAATGCTCGATCTGTACGAAAACGTTTTCGAACTCGAAGTCATTAAAAAGGCATTCTTCAGTCCATACGGGTGTCCGGAAGTACAGTTGTAGCGTCACAAATTGCGTTAGGACTTTTCATTCGAAGAAACTGATGTTGGCACACTTGGAGCTACGTCACAAAAATGAAAATGGCGGAGATGAGTGA
- Protein Sequence
- MSLFCQRDKTIKIRMCRICLDANKVDMVLIEEQNGWLKLFESCFGFTLTTQDEPRLLCKICAEKVQTYVKFKEKCHKSHSLWKSVISDVKCYIVKHQNNENTNENSNDPITSKTEIKDEPFDPFFDSDVNYSNEDDNEVVINLSPTEIKVESRDEYDTKSRDDGTSNNKKKDSLRNTVNSTQNCKNSNSKGSIKKKKVCYLKHIKVCQTKIPKRRIFGQDYAYNLGLCNLSFTTIKDVCIHLKDHWTNNDLACKLCDFVGVDLAAIAAHRFSHFPRKDTMRFLCHICEKNKQSLLALHFHYRKEHLKKSGGYCSRCHTEYNKLRYWKKHELSHCAPKHICDICGKGFYYKHAIKEHVIDHMQLNKSICDICGKTFTRRRYMKLHKETVHSKSGPLECTHCNRTFKSEFSLIQHQKNMVTREKTLKCEVCHKAFITPNKLKLHMVVHSDERPYGCNICGCSYKYKSQLTDHQLKHYGILPQCSICTKTFSNSKSLKRHSSVHTGVRKYSCSVTNCVRTFHSKKLMLAHLELRHKNENGGDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00038162;
- 90% Identity
- -
- 80% Identity
- -