Basic Information

Insect: Thymelicus lineola
Gene Symbol: RREB1_1
Assembly: GCA_963932265.1
Location: OZ010705.1:5947906-5953948[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0098 0.92 11.0 0.2 1 23 77 100 77 100 0.96

2 11 0.023 2.2 9.9 0.1 1 23 286 308 286 308 0.97

3 11 0.0012 0.12 13.9 0.4 1 23 317 339 317 339 0.99

4 11 0.00076 0.072 14.5 2.0 1 23 345 368 345 368 0.97

5 11 0.0031 0.29 12.6 1.6 1 23 725 748 725 748 0.96

6 11 0.00026 0.024 16.0 1.3 2 23 942 963 941 963 0.97

7 11 0.026 2.5 9.7 5.3 1 23 969 992 969 992 0.97

8 11 0.22 21 6.7 1.4 1 23 1024 1048 1024 1048 0.90

9 11 0.26 24 6.5 0.5 1 23 1074 1097 1074 1097 0.94

10 11 0.0019 0.18 13.3 0.2 2 23 1137 1158 1136 1158 0.96

11 11 0.029 2.8 9.5 5.3 1 23 1164 1186 1164 1186 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0098	0.92	11.0	0.2	1	23	77	100	77	100	0.96
2	11	0.023	2.2	9.9	0.1	1	23	286	308	286	308	0.97
3	11	0.0012	0.12	13.9	0.4	1	23	317	339	317	339	0.99
4	11	0.00076	0.072	14.5	2.0	1	23	345	368	345	368	0.97
5	11	0.0031	0.29	12.6	1.6	1	23	725	748	725	748	0.96
6	11	0.00026	0.024	16.0	1.3	2	23	942	963	941	963	0.97
7	11	0.026	2.5	9.7	5.3	1	23	969	992	969	992	0.97
8	11	0.22	21	6.7	1.4	1	23	1024	1048	1024	1048	0.90
9	11	0.26	24	6.5	0.5	1	23	1074	1097	1074	1097	0.94
10	11	0.0019	0.18	13.3	0.2	2	23	1137	1158	1136	1158	0.96
11	11	0.029	2.8	9.5	5.3	1	23	1164	1186	1164	1186	0.97

Sequence Information

Coding Sequence: ATGTTTATAGAAATCAAAACAGAGGTCTGCGAAGCTAAAGTCGACGCTCACAACCTTCGGGGAGTGGACAAAATGAAGATCGAACACAAGTCGAGAAGCACGCGGACGACAAGCATTGACAGTGACAATCGATCAGACAGGAGCGAGGAAGAAGATACACGCAGAGCTCGCAAGAGAGCAGCATCCAGCTCACCATCTCCCATTCCATTAGACAAAAGAATTGCTCGATTCGAATGCCCAAAATGCTGGCAGCGATTCGATTCAATCAACGCATTTGAAATCCACCGATACACTGCACACGGTGAAGATGCCAGATCTGGCTTCGATAATTTAGATTTTCCCAGCAAAAAATATCCAGATATCTCTAGAACAGATTGCAATTCCCACGTCTCCATAAATGATCAGAGATACAGGTGTGATTCATGCTTGCGAGACTTCCCAGGTGGGCATGCCCTTGATATCCATAGAAAGACTTGCTCAGTGTCGACTAGGCTCTCCAGTCCTGACAGAGAGCGCAGGGAAGACTTTTTTGCAAAGTTGGATCTCAGAAACAGACCTTTCGGGATTCCAGGCACGTTAACACCTCCGATGGAGCGTTTTACGCCAAAATTTGATGAAGGCCATGTGACAACAAACGGTATCAAACATATTGATGCAGCCCGAGACTTGGCAGACATTCAATCCATTTTAAATGTTACATCAACGGGCAGCTTATTGGAAAGACTAACTGGCACTCGCGTTGCTTTAGAAAGCACTGTCCTTACGCCACCCGATACAGTAATTAAGGAACGTGAACAAGAAGAAACGCAAGATAACTTTGCTGCAGAATTCAGGCGGATGAAATTGCGAGGTGAGTTTCCATGTCGGTTGTGCCCAGCCAAGTTTCCCAATTTGAGGGCATTGAAAGGCCACAATAGAGTACACCTTAGCGGCACAGGACCTGGCCCATATCAATGCAATATGTGTCCTCACGCTTCTCTGGACAAGGCAGCTCTTGTGCGTCATATGCGCACTCACAACGGTGACAGACCTTATGAATGTGCCGTATGTAATTATGCTTTTACAACTAAGGCAAATTGCGAACGACATCTGCGTAACAGACACGCTAAGGTTACAAGGGAAGACGTCAAACGCTCAATAATATACCACCCATCGGAAGACCCTAACAACGATGAAGTGAATTCTAAGCTCGCTCGTGAAGAAGTAAAAAGGTCGTTGGCATTCCACACGCCTGAAACTGAAAGACGTAGTGATAGTACTGGACGTGACACCCCTCTCACACATTATACTCCCAGTTTCATCACAGACAGGCATCCAGTTACTTCCTTATCATCAAAACCACTAACCCAATTGACTGAAATACCATGTTTAACTCCTAAAGAATACAATAAAGAGCCAGAGCAACCATTGCCTAGAATAAAAGTTAAGGGAATAGGACAACTGACTCAAATACCAGACTTCAGGCCACCAGAAATTATATTCAAGGCAAACGATATTTCCCCACCTGACAATTATGATGAGGAGGCACCTGTCGATCTCAGTACCAACGACAATAATAACTGTGATGTTCTTGATCTAAGTAAAAAGAAACGTGATGTAGAGGAACCAGAAATTAAAGTCCCACCGAGACAAACGTTTGAACAAAATGCAGCATCTGTTGCCGCATCAGcatatgaaaaaacaagattcTTACTGGCGCAACAAAGACTTTTCGAAACTTCTCTACCAAAAATAGATCCTGCTTACTACGCATCTCAGCTCACTCAACTGTATGCTGGAGCAGTACCAGGCCTACCTGGCTTGCCATTACCACCGTCCTTTCCTATCAACCCTTACTTTCTTCCGACTTCTTTTTTTCCCCACCCAACTGACTCGCAAGAAGTTGCCGAAATAAAACAACGCATTCAAAAAGAAATCATTCGAGGTCTAAGTATGTCAGGCGGGAGGCTAGTAACGAATGAACAGGAAACTCAACCGAAACAGGAACCAGAAGAGGAAGAGCAAAAACCTTTGCTCCAAGTTGAGACTTCATCAACGCCACCCCCACTTCCTGAATCTCCAAGGCCGCTTAGCAATAATCTTGCACCGCAGAGCGACTCCGTTAAAATGGTAATTAAAAATGGCGTACTTATGCCTAAACAAAAACAAAGACGTTATCGCACTGAAAGGCCATTTTCTTGCTCACAGTGCTCTGCACGCTTCACTTTGCGTTCTAACATGGAACGTCACGTGAAGCAACAGCACCCTCAACACTGGAGCGTTCGAAGACCAGGACCGAGGGCTCCTCCACCGTATCCCAACACTGATGCTTTAACGGACCGTGTGAAATATGCTCTTTTAGCCCGCCATTTAGAAAGACCTATACAACCAAACGAAGGTTCGCCAATAAGAAGGGATTCCGATGAAGTAGCTGACAATGAGGAAGATGAAGATGATGCTCTGGTAATAGACGAAGAACCTGAAGATAGAAAGCCTGAAGAACATACTGCTGCTCACCGAGCTGCCGCGGAAATACTAATGGCTTCCCGTCAGCAGGAAATGACTAAAGATTTTGACTTGAAAATAGCTGGGAATCTTATTAATAAACCCATACCCATCACTACGGATAAAGCAGAAGCAGGAGTTGATGCCAATACCGTACCAGAATCCCTACCGGCCGCAGTGGTTCCAACCCGAAGTGACGAGGAAGAAGATGAGGAAGGACTAGTAGCTTCAACTAGCGAAGGCAACAACTCTGGAAGTGATGAAAATAAGTCTGAGTCGGATACTGGCAACCAGCCACCGAAGAAAAAGTCTGCCTATAGCCTAGCCCCAAACCGAGTGTCCTGCCCGTATTGCCATCGAAAGTTCCCTTGGTCTTCCTCACTCCGGCGGCATGTCCTCACCCATACTGGCCAGAAACCTTTCAAATGTCCGCATTGTCCTTTGCTTTTCACCACGAAGTCGAACTGCGATCGCCACTTGCTGAGAAAGCATGGCGGATCTGCTAGAGCTATTTTAGCAGAGCCCATTCCTGACACGGTGACTCAGCCACAACCTGCAAACGACAGGGCTGTTCCAGACCGACCTTTCAAGTGCGCTTCCTGTCCCACCAGCACCTTTTCCTCAATGGAGACTTTGAAGAAACACATGTCTTCTCGCCACAGCAATGGAGACTCTCAGCCTTCTTCGCCCAACCCTGAAGGAACTCTGGAGGAAGGTGGAGATGGCAGTCTGGTCTTCAAGTGTCATTTGTGTGAAGCGTCCTACAACGAGAGAAGTGGTGCTTTGAGCCATTTAGCATCGAACCACTCGACGGAGTATGATCAGCTGGTCAGCAAGGGCGCTCTGGACGCGGCCAGTGACAGAAGCGAGAGTGCTGATGATGATGAGAGGGGGAAGTTTCCTGATCATGCTAATAGGAAGGTGGTCTGCGCTTTCTGCGTCCGTCGATTCTGGTCAGCGGAAGACCTGCGCCGTCACATGAGAACCCATTCTGGTGAACGTCCCTTCGCCTGCGACCTATGTCGTCGTCGCTTCACGCTCAAACACAGCATGCTGCGACACCGCAAGAAGCATCGTGAGGAAGTCACTGATGATGAGGAAGCGTCTCCTCCGAACACGCCTGAAGATGCTGTTACGAATGGaTTCCGCTATCAAGACGACGATGGATCTGGCAGCGAGATACCAAACAACGTGAACAACAACAACTCTCCACCCTCCGTGCACTACGACAAGAAACTTAAATTGGAGATGACGTCACGCAAGTACTCCTCTGAAGTTGAAAATGACACGGAAAATGGCGGCGATCTGATTGGAAAGCTCCTCGGGATCCCCGACAAGACTATCATCAATAAACTCCTCTCCTCCGCGGACGAGGCAGCGAAGTTCCTCGGAGTGAACAAATGA
Protein Sequence: MFIEIKTEVCEAKVDAHNLRGVDKMKIEHKSRSTRTTSIDSDNRSDRSEEEDTRRARKRAASSSPSPIPLDKRIARFECPKCWQRFDSINAFEIHRYTAHGEDARSGFDNLDFPSKKYPDISRTDCNSHVSINDQRYRCDSCLRDFPGGHALDIHRKTCSVSTRLSSPDRERREDFFAKLDLRNRPFGIPGTLTPPMERFTPKFDEGHVTTNGIKHIDAARDLADIQSILNVTSTGSLLERLTGTRVALESTVLTPPDTVIKEREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLAREEVKRSLAFHTPETERRSDSTGRDTPLTHYTPSFITDRHPVTSLSSKPLTQLTEIPCLTPKEYNKEPEQPLPRIKVKGIGQLTQIPDFRPPEIIFKANDISPPDNYDEEAPVDLSTNDNNNCDVLDLSKKKRDVEEPEIKVPPRQTFEQNAASVAASAYEKTRFLLAQQRLFETSLPKIDPAYYASQLTQLYAGAVPGLPGLPLPPSFPINPYFLPTSFFPHPTDSQEVAEIKQRIQKEIIRGLSMSGGRLVTNEQETQPKQEPEEEEQKPLLQVETSSTPPPLPESPRPLSNNLAPQSDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPGPRAPPPYPNTDALTDRVKYALLARHLERPIQPNEGSPIRRDSDEVADNEEDEDDALVIDEEPEDRKPEEHTAAHRAAAEILMASRQQEMTKDFDLKIAGNLINKPIPITTDKAEAGVDANTVPESLPAAVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGNQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPIPDTVTQPQPANDRAVPDRPFKCASCPTSTFSSMETLKKHMSSRHSNGDSQPSSPNPEGTLEEGGDGSLVFKCHLCEASYNERSGALSHLASNHSTEYDQLVSKGALDAASDRSESADDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEVTDDEEASPPNTPEDAVTNGFRYQDDDGSGSEIPNNVNNNNSPPSVHYDKKLKLEMTSRKYSSEVENDTENGGDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: iTF_00887712;
80% Identity: -