Basic Information

Insect: Thymelicus lineola
Gene Symbol: -
Assembly: GCA_963932265.1
Location: OZ010681.1:16307150-16310736[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.046 4.3 8.9 1.2 1 23 5 28 5 28 0.94

2 16 3.3 3.1e+02 3.1 4.2 3 23 58 79 58 79 0.97

3 16 0.012 1.1 10.7 0.5 1 23 101 123 101 123 0.98

4 16 0.012 1.2 10.7 0.3 1 23 127 149 127 149 0.94

5 16 0.051 4.8 8.8 0.7 1 23 154 177 154 177 0.93

6 16 0.0006 0.056 14.8 4.3 1 23 183 206 183 206 0.96

7 16 0.04 3.8 9.1 0.3 1 11 213 223 213 227 0.88

8 16 0.17 16 7.1 1.5 1 23 348 371 348 371 0.96

9 16 1.1 1e+02 4.6 0.4 2 23 396 418 395 418 0.92

10 16 0.025 2.3 9.7 0.1 1 23 442 464 442 464 0.96

11 16 1.6e-05 0.0015 19.8 0.3 1 23 468 490 468 490 0.98

12 16 0.00067 0.063 14.7 0.7 1 23 495 518 495 518 0.95

13 16 0.0099 0.94 11.0 0.3 2 23 525 547 525 547 0.92

14 16 0.14 14 7.3 6.1 1 23 554 577 554 577 0.94

15 16 0.00015 0.014 16.7 3.6 2 23 584 605 584 605 0.98

16 16 7.9e-05 0.0075 17.6 1.5 1 23 611 633 611 633 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.046	4.3	8.9	1.2	1	23	5	28	5	28	0.94
2	16	3.3	3.1e+02	3.1	4.2	3	23	58	79	58	79	0.97
3	16	0.012	1.1	10.7	0.5	1	23	101	123	101	123	0.98
4	16	0.012	1.2	10.7	0.3	1	23	127	149	127	149	0.94
5	16	0.051	4.8	8.8	0.7	1	23	154	177	154	177	0.93
6	16	0.0006	0.056	14.8	4.3	1	23	183	206	183	206	0.96
7	16	0.04	3.8	9.1	0.3	1	11	213	223	213	227	0.88
8	16	0.17	16	7.1	1.5	1	23	348	371	348	371	0.96
9	16	1.1	1e+02	4.6	0.4	2	23	396	418	395	418	0.92
10	16	0.025	2.3	9.7	0.1	1	23	442	464	442	464	0.96
11	16	1.6e-05	0.0015	19.8	0.3	1	23	468	490	468	490	0.98
12	16	0.00067	0.063	14.7	0.7	1	23	495	518	495	518	0.95
13	16	0.0099	0.94	11.0	0.3	2	23	525	547	525	547	0.92
14	16	0.14	14	7.3	6.1	1	23	554	577	554	577	0.94
15	16	0.00015	0.014	16.7	3.6	2	23	584	605	584	605	0.98
16	16	7.9e-05	0.0075	17.6	1.5	1	23	611	633	611	633	0.98

Sequence Information

Coding Sequence: ATGAAGCATACCTACCTATGTTTTTACTGCGATGAGCAGTTTATAGATCCTGCTATATTGCGTCACCACAAGTCTACCAAGCATCCTTTCCCGTCCTCTATGGAAATAAAGGTTATGATATCTAAGTTGAAGAAACACGAGTTAATCAAAGTAGATATAACCGATGTGGGGTGCAATTTGTGTAACGAAGAAATCTGTAGTTTTCATGATCTTaaatatcatttattaaaaacacatGAAAAAAACATTGATCCAAAATCTAATGATGGCGTCTTACCATTTAAGGTAACTAAAAATGACTTTAAATGCGCGCTTTGTGAGGCAAAATACGATGAGTTCAAGACATTAAATCAGCACATGAACAttcactttcaaaattttatttgtgaGCAATGCGGTAGTGGTTTCATTACTCCAGAAAGACTAAAGACCCACTCGTTTTCGCACGAGACAGGTTCCTTTGCTTGCGAAAGTTGTGATAAGATCTTTCGGTCGGTGAACGCTAAGAGGGAGCATCATGCGACAGTTCATATGCAAGTGAAGAGACACCGGTGCCCTCATTGTCCTGAGTCGTTTAGAAACTACTTTCAGAGGAACAAGCATATATCTTCAGTCCACGGGTTAAAGTTGAAGGAGTTCAAATGCACAATGTGTCCCAAAGTGTTTACGTTGAGCGGAGACGATGCGGATATTTTGACGGAAAAGCCGCCATCGAAACGGATTGTGCCCCTATTCCAAGTGGCATACGATCGCAGCCTCTGTAGGCCTCTGGGAACCGTCTTGGACTTCGCAAAATTACGGCTCAACGCCAAAACGAGCTCTCAAATTAGCGGCACTTACCTTGAACCTCCGCCTAATATAAGCCCGCCCCGTAGCCCGTCACCAGTAGATATTGGTCCAGCATCTCCGACTACAGTAAAAAATGCGCCTATCCGAATCTCACCATACGTCAAAGCAAAGAAGCAAGTCGATTATAAACAGAATGCGCTTACCGTCTTCGAATTTTCGTCCGCTTATCCATTTATATACGGCAACAATAAGTTTAAATGCTTCATCTGTTCCCAGCAGTATCTCGAAACATCTTTATTAAGGCAACATATGAAAGAAAGTCATACGTTGGCTCCTTTGAAAAGATTACTTAATAATAGGagagaaaatattttgaaagttgATGTCAGTGAGTTAGTTTGCAAGATTTGTTCTCTGAATCTAAAGGACTTGATGCAACTCAAGTTTCATTTAAGAGATGACCATCAGAAATCTATAGATCCAAATTTGCAAGATAACTTGATACCGTTCAAGTTGGATGGCGCAGAAGGTtcttataaatgtgtaatgtgtGACGAAACATTCATTAAAGTGCGAATATTAGTAATCCACATGAGCGTACATTTCAATAACTATAGCTGTGAAGTATGTGGCTCGGTGTTCACGACATTACGACTTTTAAAGAAGCATCTAGAAGTCCACGAAACGGGCAACTATCCATGCGATAAGTGCAACAAAGTCTTCAGTACAACCCAGAAAAGATCTTTGCATATCAGAGGAGTTCATCTCAAGCAGTATCCAAGGAGATGTCCAATTTGCCCTGAAAGATTTAATTCTAACTACAGGAGGACTATACATCTGCAGGATGTACACAATCAGTCGACAAGGGTGCATAAATGCGAAACTTGTGGACGCGGATTCAATTTGAAGTATCATCTCATTTGTCATAACCGTTCCGTGCATCTTCAGGAGCGAAACGCGCAATGTAAAGTGTGTCTTCAAAGATTTTGCAACAAGGAGACCTTGAAGCGGCACATGATAATACACACTGGTGAAAAGAAACATAAGTGCGAGATTTGTGGGTTAGCTTTCTTAAGGAGGAAGAATCTTAAAGACCATCTTCGGCTGCATTTGTAA
Protein Sequence: MKHTYLCFYCDEQFIDPAILRHHKSTKHPFPSSMEIKVMISKLKKHELIKVDITDVGCNLCNEEICSFHDLKYHLLKTHEKNIDPKSNDGVLPFKVTKNDFKCALCEAKYDEFKTLNQHMNIHFQNFICEQCGSGFITPERLKTHSFSHETGSFACESCDKIFRSVNAKREHHATVHMQVKRHRCPHCPESFRNYFQRNKHISSVHGLKLKEFKCTMCPKVFTLSGDDADILTEKPPSKRIVPLFQVAYDRSLCRPLGTVLDFAKLRLNAKTSSQISGTYLEPPPNISPPRSPSPVDIGPASPTTVKNAPIRISPYVKAKKQVDYKQNALTVFEFSSAYPFIYGNNKFKCFICSQQYLETSLLRQHMKESHTLAPLKRLLNNRRENILKVDVSELVCKICSLNLKDLMQLKFHLRDDHQKSIDPNLQDNLIPFKLDGAEGSYKCVMCDETFIKVRILVIHMSVHFNNYSCEVCGSVFTTLRLLKKHLEVHETGNYPCDKCNKVFSTTQKRSLHIRGVHLKQYPRRCPICPERFNSNYRRTIHLQDVHNQSTRVHKCETCGRGFNLKYHLICHNRSVHLQERNAQCKVCLQRFCNKETLKRHMIIHTGEKKHKCEICGLAFLRRKNLKDHLRLHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00167106;
90% Identity: -
80% Identity: -