Tlin003673.1
Basic Information
- Insect
- Thymelicus lineola
- Gene Symbol
- -
- Assembly
- GCA_963932265.1
- Location
- OZ010681.1:15483905-15488275[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.081 7.7 8.1 3.2 1 23 76 98 76 98 0.98 2 17 0.42 40 5.9 0.0 2 23 124 146 123 146 0.91 3 17 0.42 39 5.9 0.6 3 23 170 191 169 191 0.93 4 17 0.00042 0.039 15.3 0.3 3 23 199 220 198 220 0.95 5 17 0.00012 0.011 17.0 1.2 3 23 227 248 226 248 0.97 6 17 0.016 1.5 10.4 3.4 1 23 254 277 254 277 0.97 7 17 0.00085 0.08 14.4 2.2 2 23 284 306 283 306 0.95 8 17 0.017 1.6 10.2 1.3 1 23 312 334 312 334 0.94 9 17 0.007 0.66 11.5 1.3 1 23 340 363 340 363 0.90 10 17 2 1.9e+02 3.8 1.3 1 20 458 477 458 480 0.85 11 17 0.52 49 5.6 0.1 2 23 506 528 505 528 0.91 12 17 0.0022 0.2 13.1 0.7 2 23 551 573 551 573 0.94 13 17 0.072 6.8 8.3 7.8 2 23 580 602 579 602 0.95 14 17 0.17 16 7.1 2.5 1 23 633 656 633 656 0.89 15 17 5.8e-06 0.00055 21.2 1.2 2 23 663 685 662 685 0.95 16 17 0.06 5.6 8.6 0.1 2 23 692 713 691 713 0.96 17 17 1.3e-05 0.0012 20.1 1.9 2 23 720 742 719 742 0.96
Sequence Information
- Coding Sequence
- ATGTATAAAGTGCTACCAAGAGAACCTAGGGGTGGTCAGGAGGAAACAAATACGGCGATCGATAACGAGGAACAATTAGAAGAAAACAAGCTGACGATAGAAATAGCGCCGGTCCGCGTGAAAAAGTCGCTCTCTGCTAAGGAAAAACGCAAGATCTTCAGAAACAACGTTGTCCAAGTCCTCACAAAGTCGACTGTGATGCCCTTTCGTTGGCTCAAGAGTTCCTATAGGTGCTTCTACTGCTACGACATATTTCAAGAGTCTTCAGACTTGAAGAACCATCAACATGTTCACGTAGGGGACCATATTAAGGAGCAGGCTATGAGTAACTATTGGGAGCCGGTAGTCTATGTCGATATATCTAATTTGTCATGCAGACTCTGCCCGGAGCCAGTCTCGGATTTATTCGACCTCATCGATCACTTAATCGCGAAACATGACGTCATCTATAACAAAGATGTCGGGATTTGTATGGTAGCGTTCAAGCTAGATAACTTTAATGTCAATTGCTTAGCCTGTGGGGCTAGCTTTTACACTTTTGGTCCCCTGCTGCATCACACAAATAAGGATCACAAGGGCACTTCAGCAATACTGTGTGACGTGTGTGGCCAGCACTTTAAAGACGCGTACCTATTGCGACTTCACGTTAAAGCTGTACACGAGAATACGGGTTTGCTTTGCACCGAGTGTGGAGAGAAGTTCGAGACGCGAGCGAAGTTAAAGACTCACCAGAAGAACCAGCACAATATGGACAAGAAATACAAATGTCTGATGTGCACGCAAGTATTCAATAGTCATTACAAGCGGTCGAGACACATGGCATCGGAGCACAAGAACCGACAGGAGGTCAAGTGCCTTCACTGTCCAAAGACTTTCGTCTTTCGGAGTATGATGATGACGCATCTACGCGACACGCACTTAAAAGTTAGGAACCACGTCTGCGGAGTTTGCGGCTGGAAGGCGTTCAATAGCAACCGTTTGaagaatcatatgtataagcaTAGTGGGGAGAAGAATTTTAAATGCGATTCGTGCGATAAGGCGTTTACGACGAAGAAGATTATGAAGGCACATTTCGCGCGGATGCACAAATCAGTTCAGCAACCAATGTTGCCATTTGAGAATCCTTACGTAGGAGCTTTAGGAAGCCAAACATCAGACGAAGACTCCGAGACCGACCATGAAGATAACATAACACTCATAACATTAGcagataaatattgtaaaactgGTGTGGCGACCAAAGACCATACTACTGAAAAGAAAAAGTCAGAAATATCAAAGCaagaaaaattagaaataacGAGGCAAAATATTACCCAGGTATTGATCAACTCTACCGTGTATCCCTTCAAATGGCTCAGGAGTATTTACAGATGTTTCTTTTGCTACGAAGAGTTTAAGGAACCAAAACAACTTTTACCGCACTTCGGAAGCCATTTCAAAACTGAAGAGATTCACGTAGCTATGAACAATTACTGGGAGACCGTCGTCTACGTCGATGTATCGAAGATTTCGTGCAAACTCTGTCCTACAAAGATCGAAAATTTGCAAAACCTAGTCGATCATTTGATCGACAAACATCAGGTCCAGTTCAACAAAAATGTCGACTTGGGGATGGTACCATTTAAACTGGATGAAACTGCAGCAAAATGTCTCGAATGCGGCTACGGATTTAGAAGTTTCGCTCATTTATTCGTCCATACAGTTAGGGCCCATAAAACTTATTCTGTGATTCACTGTAACATATGCGGGCAACACTTCAAATCTGCCAGAGAAATGCATCATCACAAGAACATGACACATCCCAAAACGGAAGTCAAATGCACAGTTTGTGGTCTCATCCTGCCGGCGACGAGGATGAAAGCGCATTTGCAGAACTTTCATGGAAAGAAATACGACTGCTTCTATTGTACGGAAAAGTTCGTGACACACTATCAACGCGCCAGACACTTTATCGAAGTTCACAAGAGTAGAGAGAATCTGAATTGCTCCTACTGCACGAGAACATTTGTCTTCTCCTCCTCCTTGAAAAGGCATATTAGGGAGATCCATCTGAAAGAAAAGGATTCGGTTTGTGATATTTGTGGGTGGGAGGGCTTCGGGAAGGCTCGGATGCAAAGGCATATGATGAAACACAGCGACGAGAGGAATATCAAATGTCCAGGGTGTGATAAATCCTACAAAACGAAGAAAACAATGAGACAGCATTACAGAAATATGCACCAGAAGTCAGAGAGAGTCAAAGACGAGGTGCTTAaaacttttataaatttataa
- Protein Sequence
- MYKVLPREPRGGQEETNTAIDNEEQLEENKLTIEIAPVRVKKSLSAKEKRKIFRNNVVQVLTKSTVMPFRWLKSSYRCFYCYDIFQESSDLKNHQHVHVGDHIKEQAMSNYWEPVVYVDISNLSCRLCPEPVSDLFDLIDHLIAKHDVIYNKDVGICMVAFKLDNFNVNCLACGASFYTFGPLLHHTNKDHKGTSAILCDVCGQHFKDAYLLRLHVKAVHENTGLLCTECGEKFETRAKLKTHQKNQHNMDKKYKCLMCTQVFNSHYKRSRHMASEHKNRQEVKCLHCPKTFVFRSMMMTHLRDTHLKVRNHVCGVCGWKAFNSNRLKNHMYKHSGEKNFKCDSCDKAFTTKKIMKAHFARMHKSVQQPMLPFENPYVGALGSQTSDEDSETDHEDNITLITLADKYCKTGVATKDHTTEKKKSEISKQEKLEITRQNITQVLINSTVYPFKWLRSIYRCFFCYEEFKEPKQLLPHFGSHFKTEEIHVAMNNYWETVVYVDVSKISCKLCPTKIENLQNLVDHLIDKHQVQFNKNVDLGMVPFKLDETAAKCLECGYGFRSFAHLFVHTVRAHKTYSVIHCNICGQHFKSAREMHHHKNMTHPKTEVKCTVCGLILPATRMKAHLQNFHGKKYDCFYCTEKFVTHYQRARHFIEVHKSRENLNCSYCTRTFVFSSSLKRHIREIHLKEKDSVCDICGWEGFGKARMQRHMMKHSDERNIKCPGCDKSYKTKKTMRQHYRNMHQKSERVKDEVLKTFINL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00025445;
- 90% Identity
- -
- 80% Identity
- -