Basic Information

Insect: Thymelicus lineola
Gene Symbol: -
Assembly: GCA_963932265.1
Location: OZ010709.1:7814838-7816433[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 5.2 4.9e+02 2.5 1.9 3 23 212 233 209 233 0.90

2 10 0.0022 0.21 13.1 3.0 1 23 239 261 239 261 0.99

3 10 7.6e-06 0.00072 20.8 3.6 1 23 267 290 267 290 0.97

4 10 0.0018 0.17 13.4 0.4 2 20 297 315 296 317 0.94

5 10 9.1e-07 8.6e-05 23.7 2.5 2 23 337 358 336 358 0.97

6 10 2.5e-06 0.00024 22.3 2.4 1 23 365 387 365 387 0.98

7 10 0.00083 0.078 14.4 1.0 1 23 393 415 393 415 0.97

8 10 7.2e-06 0.00068 20.9 2.1 1 23 421 443 421 443 0.96

9 10 0.00028 0.026 15.9 4.3 1 23 449 471 449 471 0.98

10 10 0.00061 0.057 14.8 3.5 1 23 477 500 477 500 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	5.2	4.9e+02	2.5	1.9	3	23	212	233	209	233	0.90
2	10	0.0022	0.21	13.1	3.0	1	23	239	261	239	261	0.99
3	10	7.6e-06	0.00072	20.8	3.6	1	23	267	290	267	290	0.97
4	10	0.0018	0.17	13.4	0.4	2	20	297	315	296	317	0.94
5	10	9.1e-07	8.6e-05	23.7	2.5	2	23	337	358	336	358	0.97
6	10	2.5e-06	0.00024	22.3	2.4	1	23	365	387	365	387	0.98
7	10	0.00083	0.078	14.4	1.0	1	23	393	415	393	415	0.97
8	10	7.2e-06	0.00068	20.9	2.1	1	23	421	443	421	443	0.96
9	10	0.00028	0.026	15.9	4.3	1	23	449	471	449	471	0.98
10	10	0.00061	0.057	14.8	3.5	1	23	477	500	477	500	0.97

Sequence Information

Coding Sequence: ATGTCAACTGAAGAGGAGACTTACTGCCGGCTCTGTGCCGATCCTACTCCAAAAGCACAGCTAATATCGCCGGAAGAAGACGTCGCGATTAGTTCGAAAATAGCAACAAAGTTATTATGGATAAACATTGACATATCAACCCCTAGTTTGCTTCCAAGTACAATATGCTTCGCCTGCTTCGATGCCTTAGAACGTACCTGGTCTTTCTTGCACAATGTGCGTACTGCTCAAGAAAAACTATCGTTACTATTATGGGCGAAAGAACCGCCTGAAAACAGTGAAGGCGTGAAGAAACCTCAGAATCCTGACGCGGGAAAACCCGTTGATAAGAACTGGGAAGCTTTCCAGGAGTTAAAAACTGAGTTCAAAGTGGAAACGGTTGAAAATCCCGATTTTGTTGCTGCAGAGTCTTTGCTCGAAATAGACTATGAAATCAAGACAGAACGCAGTGATAATGGCTTCGAAGACGACTACACAAATGGGTTCGATTCAACTGACAGTGACATGCCTTTAGGAGTGGCTGTTAAAGCTAAAAAAGTGAAGCGGGAGCATAAAAAGCATCGGAATGAAAAGTCGTCAGACACTATCGACAAAGCTGATGTGAGCACAACATGGGAGAACTATTTATGTGGTTGTGGCCGGTGTGATGCTCGTTGCAAGAACATCACAGCATTACAGATGCATTCGCTGCAAATACACAACCAATGTTGCACATTTAAATGTCTGGAATGCAATAAACGTTTCTTTACTTTCAAGCCGTTTATAACACATGCACGCACACACATAAACGATCTACGCTACAGTTGTGAATTTTGTAATAAACTCTTCAGTCGATCGTCTTATTTAAAACGCCATCGGAACAAGGAGCATTCTTGTCCGTTTCTAACAAAATGCAGGCATTGTGGATCGAGCTTTGATACTGCAGAACAGTTAAAGGAGCACAAAATTGCCTTCGGCACCCACTTTGGCGGGCGCTCTAAATCCGAAGGCaaagaagaaataattttaaagtgcGAGTTTTGtgataaaaagtttaaaacacgAAGTAATCTACAGCAACATAGGCTAGTTCATACGGAACGAAGTAGAGACTTTTCGTGTCATGTTTGTGGTAAAATGTTCTTTACTAAGGGTACGCTAGGCACACATATGATGACGCATGAAGAAACAAAGCCGTTTAAATGTGAATTCTGTCCATTAGCCTTCCGAGCACGAGGGAACCTCCATTCTCACTTAAGTTTACATTCCGGGGCCAAGCCATTTGTATGTGAGCAGTGTGGAAAGAGTTTTAGAGTGAAACGACACTTAAAATCCCACTCTATAGTACACACAGACTTAATGCCATTTTCCTGTGATTATTGCAGTAAACGATTCAGGTTTAAGACTCGGTTAAACCTTCACCTACGTCAGCATACCGGTGCAAAGCCGTATCGTTGTATATATTGTCAACGGGACTTCACAAATGGGTCAAACTATAAAAAACATATGAAACGAAGGCATGGCATTGATACGTCTACTAAACAAAAGTATGACAATATTGTCACTGATGTTAAGCCTTGTCATTGTGACGGGACTGAAACAGATGGACAGACATGA
Protein Sequence: MSTEEETYCRLCADPTPKAQLISPEEDVAISSKIATKLLWINIDISTPSLLPSTICFACFDALERTWSFLHNVRTAQEKLSLLLWAKEPPENSEGVKKPQNPDAGKPVDKNWEAFQELKTEFKVETVENPDFVAAESLLEIDYEIKTERSDNGFEDDYTNGFDSTDSDMPLGVAVKAKKVKREHKKHRNEKSSDTIDKADVSTTWENYLCGCGRCDARCKNITALQMHSLQIHNQCCTFKCLECNKRFFTFKPFITHARTHINDLRYSCEFCNKLFSRSSYLKRHRNKEHSCPFLTKCRHCGSSFDTAEQLKEHKIAFGTHFGGRSKSEGKEEIILKCEFCDKKFKTRSNLQQHRLVHTERSRDFSCHVCGKMFFTKGTLGTHMMTHEETKPFKCEFCPLAFRARGNLHSHLSLHSGAKPFVCEQCGKSFRVKRHLKSHSIVHTDLMPFSCDYCSKRFRFKTRLNLHLRQHTGAKPYRCIYCQRDFTNGSNYKKHMKRRHGIDTSTKQKYDNIVTDVKPCHCDGTETDGQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00970649;
90% Identity: iTF_01438279;
80% Identity: -