Tlin005483.2
Basic Information
- Insect
- Thymelicus lineola
- Gene Symbol
- -
- Assembly
- GCA_963932265.1
- Location
- OZ010682.1:10580395-10589338[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00026 0.024 16.0 3.5 1 19 149 167 149 172 0.90 2 10 0.3 28 6.4 0.9 5 23 181 199 179 199 0.94 3 10 0.0011 0.1 14.0 0.3 3 23 207 227 205 227 0.96 4 10 7.9e-05 0.0075 17.6 4.3 1 23 235 257 235 257 0.97 5 10 0.0001 0.0096 17.3 1.1 1 23 266 289 266 289 0.97 6 10 0.0002 0.019 16.4 0.2 1 23 295 317 295 317 0.97 7 10 1.5e-06 0.00014 23.1 2.4 1 23 323 345 323 345 0.98 8 10 0.00095 0.089 14.2 0.6 1 23 350 372 350 372 0.97 9 10 4.3e-06 0.0004 21.6 4.1 1 23 378 400 378 400 0.97 10 10 0.0007 0.066 14.6 2.1 2 23 407 429 406 429 0.95
Sequence Information
- Coding Sequence
- ATGGTGGATAATGATTTAGGCGTTTTCTATTTCATAGAGAGATCCATGCTCTTTAGTGCAATAAACAATGAAGCTACATTATCAGAATTCAACAGAGATGATTTCCATAATGATGATACCTCTTATCATGATGATGtcgacgatgatgatgatgatgatgatgatgacgatgagtATGCTGACCTCTCTCTTGCACAATTAAAAGAAGCaaagaagaaacatgtaaaaaggAAAGTATTAACAGAGGAAGAAACTGAGAAATTTCAGAAGGTTTTAAAAGAAACAAACTTTAAAGTAAAGGATTTTGTCAAATCCAAGAGCGTGCTTTACAAGCATGTATCTGATCACAAAGTGGAGAGCAGAAAATATAGAAAAGAAGAGAATTCGGACAATAAGCAACAGGACTCAAAGTACTCGAGCCTTCATGTTAAAGATTTTGTaaaTTTCACCTGTTCCGTGTGTAATAAACAATTTTCGAGCTGGTACACTTTAAGATCGCACTGTGAGAAAATTCACAAGATTCGTCCCGTCGTGCACTGTATTTGTGGCATCACTTTAAAATCAAAATCTGTATTATATAAGCATGTCCAGGATCATAAAAATCCTGATATCCTAGCATGCGACAAGTGCCCAAGAATCACAAAAACATTAGCTGCCTTGAACAAACATAAAATGAGACACATACCAAAGGCGGAGAGAAAGTTTTGTTGTTCATCATGTGATAAGATATTCAATACTAAAGATACGTTGAAATCACACGAAAGATCACACATACCCATTGAGGAACGAAAAATATATCATTGTGATATTTGCGACTTAAAGTTCACGACGCGTTCGTCAGCGGCGTCTCACAGGCGCGTGGTGCACGAGAAGATCAAGAGCTACGTGTGCGACCTGTGCGGGTACGCGTGCGGCACCAACGGCGAGCTGCGCCAACACCGCGCCATACACAGCGACGACAAGCCCTTCGTCTGCAGGACTTGCTCCAAGCCGTTCAAGACGTACTCGAACCTGAAGACGCACATGGACACGCATGAGGACACGTCGTACGCGTGCTACGTGTGCAGCCGCGTACTCAACAGCCGGCGCACGCTGCGCAAACACCTGCTCGTGCACGAGGACAAGTGCCGCCACATCTGCTCCTACTGCAACAAGGCGTTTAAGAGGAGGCAGACGCTCAAGGTGCACATGTACACGCACACGGGCGACAAGCCGCTGACGTGCAAGTGGTGCGAGGAGCGGTTCGCGTACGCGTCCACGCTGCGCTCGCACCGGCTGCGCTGCCACCCCGACAAGATGGCGGCGCAGCACCACGCCTACTCCGCGTACCAACACCAGCACTCGCAACAACACCCGCATCTCGTTATGCACCAGAGCTATAACATGAAGAACGATGTCACGCCCAATGTAAGTGTTACGAAGAATGAAGTGGAGGCTATAATAatagacaacaaaataacaGTAGTGTAA
- Protein Sequence
- MVDNDLGVFYFIERSMLFSAINNEATLSEFNRDDFHNDDTSYHDDVDDDDDDDDDDDEYADLSLAQLKEAKKKHVKRKVLTEEETEKFQKVLKETNFKVKDFVKSKSVLYKHVSDHKVESRKYRKEENSDNKQQDSKYSSLHVKDFVNFTCSVCNKQFSSWYTLRSHCEKIHKIRPVVHCICGITLKSKSVLYKHVQDHKNPDILACDKCPRITKTLAALNKHKMRHIPKAERKFCCSSCDKIFNTKDTLKSHERSHIPIEERKIYHCDICDLKFTTRSSAASHRRVVHEKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRTCSKPFKTYSNLKTHMDTHEDTSYACYVCSRVLNSRRTLRKHLLVHEDKCRHICSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCEERFAYASTLRSHRLRCHPDKMAAQHHAYSAYQHQHSQQHPHLVMHQSYNMKNDVTPNVSVTKNEVEAIIIDNKITVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -