Tlin017619.1
Basic Information
- Insect
- Thymelicus lineola
- Gene Symbol
- -
- Assembly
- GCA_963932265.1
- Location
- OZ010693.1:2969874-2989124[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.02 1.9 10.1 1.6 2 23 7 29 6 29 0.96 2 19 1.7e-06 0.00017 22.8 3.1 2 23 42 63 41 63 0.97 3 19 0.0004 0.038 15.4 0.8 1 20 69 88 69 91 0.93 4 19 0.0015 0.14 13.6 0.5 1 21 97 117 97 118 0.95 5 19 0.00087 0.082 14.3 1.8 1 23 517 539 517 539 0.98 6 19 0.00053 0.05 15.0 1.9 2 23 547 569 546 569 0.94 7 19 0.00032 0.03 15.7 0.6 1 23 600 623 600 623 0.97 8 19 0.33 31 6.2 0.1 2 20 661 679 661 681 0.94 9 19 0.33 31 6.2 0.1 2 20 720 738 720 740 0.94 10 19 0.33 31 6.2 0.1 2 20 779 797 779 799 0.94 11 19 0.33 31 6.2 0.1 2 20 826 844 826 846 0.94 12 19 0.33 31 6.2 0.1 2 20 885 903 885 905 0.94 13 19 0.33 31 6.2 0.1 2 20 944 962 944 964 0.94 14 19 0.0047 0.44 12.0 0.2 3 23 974 994 974 994 0.96 15 19 0.0055 0.52 11.8 0.5 2 23 1012 1034 1011 1034 0.96 16 19 2.7e-05 0.0026 19.1 1.2 2 23 1048 1069 1047 1069 0.96 17 19 0.0002 0.019 16.3 1.2 1 20 1075 1094 1075 1097 0.93 18 19 0.00022 0.021 16.2 1.5 1 23 1103 1125 1103 1125 0.99 19 19 0.084 7.9 8.1 4.2 1 23 1131 1154 1131 1154 0.82
Sequence Information
- Coding Sequence
- ATGGACTTCAAACCAATACCCTGTAAACTTTGTAAGAAAGAAGTACACAGCAGAAGGGCGTATGTAAAACATATGAAAACCGAACACCCAGAGACGAATACCAACAAAGAGTTAAGGTCGTTAGTTTGTGAAGTATGCGGCAAGGCTTTCAAGCATCCTTCATGCCTTACTTCACACCAACGAAAACACACGGATGAAAAGCCGTTCAGTTGTCCACAGTGCAGTAAGAAGTTCAAGAATGAATATGGTCTCAAAATGCATCTTCCTGTACATACCAACGAGTATTCTTTCAAATGCCATCTGTGTGAGAAGGCATTTGGCGACAGGGGCAGACTTAATGCACACGTTAAGTATAAAATGACTTTAAGTCACATGTATGCATGTTATAAATGTGCTTACTTATTGAATAAATATGGTGAATTTCAAGCGAAATGTTGTAGGGCATTTAATCTTCTTAGGAAACTGAGTCATGGATCATATGAGgtaACAGAAGAGAATTTAAAGCAAATAGACCGAAAGCAAAATAAATTAGAACCATTACTGTCCATAACATTTACAGAAACTGATTCCTACCAACCCAAAGAAAACTGTTCAGATCCACAAATcattcataataaaatcaagAGCGAATCATCTGTAGCTATTACAGAAGAACTgtgttatgaaaatataatagaagAGCAAGAAGAATTAAAACTACCTATCAATGACACAACAAGCATGTGTAAGAACGATCAATCAGAAAATGCTGAAATTTACACAGAGTTCAAATCAAATATCAAAACTGATATTGAAGAAGACAATAATTATCAATGCATAGATGTGGCAAATGATGAAAGTTTTGGTGACAATTCAAATGAAGAATGTCTTGTTGAGATACCTAATGAAGATCTTGATATGTGTGGAAAGAAAGCTGATAACATCGATCCAATTAAATTGGATATTGAAAACTTAGAAAGTAATTGTGAAAGTGTAAGCTTCGAACTCCCTGAAATTCTTAACACAAAAAGTAATTGTGAAAGTGTAAGCTTCGAAATCCCTGAAATTCTTAACACAAAAAGTAATTGTGAAAGTGTAAGCTTCGAACTCCCTGAAATTCTAAACACAAAAAGTAATTGTGAAAGTGTAAGCTTTGAACTCCCTGAAATTATTAACACAAAAAGTAATTGTCAAAGTGTAAGCTTCGATATCCCTGAAATTCTTAACACAAATAGTAGTGATGGCAATAAAATGGGGACTAGAAAACGAAAATGTGTAATGCTAGGAGATAATAACATCCATAGCAATAAGACcatgaagaaaattaataaaaataatgatgtgGTTGTTAGTTTGGAATGTGTTAGTAATAAAGATGTGAAAACAGTCATGAAAAAGAAGACTCAAAGAACTAGAAGTTTAAAGGTTCCagccaagaaaaaagaaagaaacagtTTGTTAAATTCCAATTTATTCAAAGATCATGTGACTATTATAAAATTGAGTCCAGAGGATGCAAGATGTGAATTGCTACTAAGAAAAGAATCAACAAACTTTAAAATGAcctctcacaaatgtgaccttTGCTATCGCGGCTTTATTTCTGAGGCCACATATCAAGCACATATGAAAAAACATAGTTCGGAATATGGAACTTTGAAATGTGACATCTGTCAATTGAACTTCAGTGACAGCAAACTTCTCAAAAAACACTATGCAATATGCCATTCATGGAAATTGTTTTGTAAGAGTTGCTCTTATATGTGTTTTAATGTtaaacAAGCACAAACTCATGTACAATCACACATTGGCAAGAAGTACATATGTAAGGTCTGTGGGGAGTCATtcagatTTCCAAGTGCCATGTCATTACACAATCGGAAAAAACATAATGTCGAGGTTGCTTGTGATCTTTGTGGCAGTATGTTCGCATCAGAGCTAGGATTGAGGTGTCATAAAAGTTTACGTCATAAAAAGgAAAAGAACGAGCACCTAGGTCCGCAATGCGACGAGTGCGATGTACACTTCGCCTCTGAGCTGGCGTGGAAGAGGCACCGTGTGCTGTGCTCCAGACACGAAGTACGCGTGGAAGAGGCACCGCGTGCTGTGCTCCAGACACGAAGTACAGTGAGTTTCTCTTGTATCATCACAACTCATAAGAACGAGCACCTAGGTCCGCAATGCGACGAGTGCGATGTACACTTCGCCTCTGAGCTAGCGTGGAAGAGGCACCGCGTGCTGTGCTCCAGACACGAAGTACACGTGGAAGAGGCACCGCGTGCTGTGCTCCAGACACGAAGTACAGTGAGTTTCTCTTGTATCATCACAACTCATAAGAACGAGCACCTAGGTCCGCAATGCGACGAGTGCGATGTACACTTCGCCTCTGAGCTGGCGTGGAAGAGGCACCGCGTGCTGTGCTCCAGACACGAAACACGAAGTACGGTGAGTTTCTCTTGTATCATCACAACTCAAAAGAACGAGCACCTAGGTCCGCAATGCGACGAGTGCGATGTACACTTCGCCTCTGAGCTGGCGTGGAAGAGGCACCGCGTGCTGTGCTCCAGACACGAAGTACACGTGGAAGAGGCACCGCGTGCTGTGCTCCAGACACGAAGTACAGTGAGTTTCTCTTGTATCATCACAACTCATAAGAACGAGCACCTAGGTCCGCAATGCGACGAGTGCGATGTACACTTCGCCTCTGAGCTGGCGTGGAAGAGGCACCGCGTGCTGTGCTCCAGACACGAAGTACACGTGGAAGAGGCACCGCGTGCTGTGCTCCAGACACGAAGTACAGTGAGTTTCTCTTGTATCATCACAACTCATAAGAACGAGCACCTAGGTCCGCAATGCGACGAGTGCGATGTACACTTCGCCTCTGAGCTGGCGTGGAAGAGGCACCGCGTGCTGTGCTCCAGACACGAAGTACACAACGGTTGCAGAGTCTGTGGAGAGACTTTGTCGACACAAGAGGAGTTGAAGAGTCACGCGCAAGAACATGGACTACGGAATACCATGATTTATTCCCATGTTAAGGACTGGGTAAAAATACCCTGTAGACTTTGTAAGAAAGAAGTAAACAGCAGAAGGGCGTACATAAAACATATGAAAACCGAACACCCAGAGACGAATATTAACGATGAGTTAATGTCTAGGTGTATTTGTGAAGTATGCGGCAAGGCTTTCCAGCAAATGTCACAACTCATTTTACACCAACGAAAACACACGGATGAAAAGCCGTTCAGTTGTCCACAGTGCAGTAAGAAGTTCAAGAATGAATACAGTCTTAAAATGCATCTTCCTGTACATACCAACGAGTATTCTTTCAAATGTCATCTGTGTGAGAAGGCATTTGGCGATAGGGGCAGACTTAATGTACACGTTAAGCGCCATCTAGGCATCCGACCATACAAGTGTTCCTACTGCGACAAATCCTTTCCGTTCCAATGCGAAGAAAGACTTCACACGAAATATGTACACTGTAAGGAGCCCTATCCCAAGCGGGATAGGAGGAAGAAAAGtgtaaagaaagaaaacattaaataa
- Protein Sequence
- MDFKPIPCKLCKKEVHSRRAYVKHMKTEHPETNTNKELRSLVCEVCGKAFKHPSCLTSHQRKHTDEKPFSCPQCSKKFKNEYGLKMHLPVHTNEYSFKCHLCEKAFGDRGRLNAHVKYKMTLSHMYACYKCAYLLNKYGEFQAKCCRAFNLLRKLSHGSYEVTEENLKQIDRKQNKLEPLLSITFTETDSYQPKENCSDPQIIHNKIKSESSVAITEELCYENIIEEQEELKLPINDTTSMCKNDQSENAEIYTEFKSNIKTDIEEDNNYQCIDVANDESFGDNSNEECLVEIPNEDLDMCGKKADNIDPIKLDIENLESNCESVSFELPEILNTKSNCESVSFEIPEILNTKSNCESVSFELPEILNTKSNCESVSFELPEIINTKSNCQSVSFDIPEILNTNSSDGNKMGTRKRKCVMLGDNNIHSNKTMKKINKNNDVVVSLECVSNKDVKTVMKKKTQRTRSLKVPAKKKERNSLLNSNLFKDHVTIIKLSPEDARCELLLRKESTNFKMTSHKCDLCYRGFISEATYQAHMKKHSSEYGTLKCDICQLNFSDSKLLKKHYAICHSWKLFCKSCSYMCFNVKQAQTHVQSHIGKKYICKVCGESFRFPSAMSLHNRKKHNVEVACDLCGSMFASELGLRCHKSLRHKKEKNEHLGPQCDECDVHFASELAWKRHRVLCSRHEVRVEEAPRAVLQTRSTVSFSCIITTHKNEHLGPQCDECDVHFASELAWKRHRVLCSRHEVHVEEAPRAVLQTRSTVSFSCIITTHKNEHLGPQCDECDVHFASELAWKRHRVLCSRHETRSTVSFSCIITTQKNEHLGPQCDECDVHFASELAWKRHRVLCSRHEVHVEEAPRAVLQTRSTVSFSCIITTHKNEHLGPQCDECDVHFASELAWKRHRVLCSRHEVHVEEAPRAVLQTRSTVSFSCIITTHKNEHLGPQCDECDVHFASELAWKRHRVLCSRHEVHNGCRVCGETLSTQEELKSHAQEHGLRNTMIYSHVKDWVKIPCRLCKKEVNSRRAYIKHMKTEHPETNINDELMSRCICEVCGKAFQQMSQLILHQRKHTDEKPFSCPQCSKKFKNEYSLKMHLPVHTNEYSFKCHLCEKAFGDRGRLNVHVKRHLGIRPYKCSYCDKSFPFQCEERLHTKYVHCKEPYPKRDRRKKSVKKENIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -