Tlin030443.1
Basic Information
- Insect
- Thymelicus lineola
- Gene Symbol
- ZNF296
- Assembly
- GCA_963932265.1
- Location
- OZ010707.1:9046547-9062181[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0028 0.26 12.8 0.7 1 23 266 288 266 288 0.98 2 11 0.98 93 4.7 3.1 1 21 295 315 295 317 0.94 3 11 0.38 36 6.0 0.5 1 23 321 344 321 344 0.90 4 11 2.7e-07 2.5e-05 25.4 2.8 1 23 350 373 350 373 0.96 5 11 0.00017 0.016 16.6 1.3 2 23 380 402 379 402 0.94 6 11 3.4e-05 0.0032 18.8 0.2 1 23 415 437 415 437 0.96 7 11 3.6e-06 0.00034 21.8 0.3 1 22 443 464 443 468 0.94 8 11 2.6e-05 0.0024 19.1 0.7 2 23 477 499 476 499 0.96 9 11 6.8e-05 0.0064 17.8 0.6 1 23 505 528 505 528 0.96 10 11 3.1e-07 2.9e-05 25.2 0.2 1 23 537 559 537 559 0.99 11 11 0.013 1.3 10.6 0.1 1 23 565 588 565 588 0.95
Sequence Information
- Coding Sequence
- ATGGAAGCCGATGAAAAAAGTGAGAAATTGGCTTGTTGTTTGGGCTGTTTATCTAGCGACGATGATGGCACCTTGTACGATTATAAGATAAGCAACGGAACTTTAAAGTCAATCATGCAGgtAGAAGAAATATGTCTATGTTACATTTGCAAACATTTAGCCCAGAAGATGGAGCTctttatacaaaatatacaaggcAATCAAATATTACTTGAAAATATCCATAACAATATAACAACTTCCATCTTAGAAACAGCTCGAACCCAGTCCCAGTTATTATGTCTGACGAGTACAAAACTGGATCCTGTAGAACTGGGAAACGGCAAGAGTAAACATGTGGATATCAAACTCGAAGTGAAAGATGAGAATGGGTTTTCCAATCACTCCGGCGATGAACTTGTCGATGATGACAATGATTTCCAAGAATCTCTAGTAAAAGAAGAAGATGATTCCcctttaaaatacttaaaagaaGATTGTACTGTTGAATTGCTAAGTGACAATTTAAGACTGCTGCCTTTGAAAAAAAGACTAACGAAGAAGAAAATTGGTGATGAAAAGGAAGAAGATTACCCGTTAAATGATTTGCTGAAAGATGAATTAGTTGCAGAAGAGTTAGAAATAGATTttgataaaagtaatattaGGAAGACAAAGGATTTTAGAAAAACGAAGACACAAGACCTTGAAAGAAAGAAggattTATATAAAACCAAAATGGTTTATATAACGCGGGAACAGTGTATGGAGGAGAGAGTTAAAATGGCTGCGGATAGAAAGTATCTCAATGCCACATACAAATGTCCGGACTGTATCAAGGGGTTCTATTTCAAAGAGGGCTATGATAAACACATGGAGAGCCACAGtgagACAATGGGTGACTACGAATGTGATATTTGTAAGCAGAGAATGGGTTCGAAGGAGAAACTGTTGCGTCACAAAAAATGTCATGAGGTCCGATACAAATGTTTGGATTGTGGGCTGACCAGAATCAATCGTTTGACGATACGTGAACACTACAACGCTTTTCATCTCAAGATACACTCGTATCGTTGTCAGCATTGCGGCAAGACTTTCACCCGCCAGGTGTCGCTATGGAAGCACATATCGTACCTCCATAATGGCGACGTGCGCGTCAAGTGCCAACACTGTCAGAAGACGTACGCTAATAAGACGGTGTTAAAGGCGCATATGATTGCGAGACACCCTCAGGAGCTGTCGGCAGGGGAGGTGATCAAGCGGTTCGTGTGCCAGGAGTGTGGCATGGCGTTCAAAGCGCCCTCCCAGCTACGGAACCACAGCATCAAACACTCGGTTCACAGAGACTACTATTGTGTTGAGTGTGATAAAAGCTTTAAATCCGAATCGGCTTTCAAGCGACACCTGAAGATCGCCGCGCCACACATCAATTACATGGAACTGCCATTACCGTGTACCAGCTGCGACAAGCGGTTCGCGATGCGACGCGACCTCGAGCGGCACATGAACCGCATGCATCTCAACATACGGCCCTTTCAGTGTGACAAGTGTGACCGGGCGTACGTCAACAACTGGTCTCTGAATGAACATAAGCGATTCGTCCACGACGGACATAAGCGGCCTCTGAAGTATCCGTGCCCAATGTGTGAGAAGGTGTTCGATCGCAACCAAACGCTAAAAGCGCACGTACGCACGCACACTGGCGAGCGTCCGTTCGCGTGCGTGCGTTGTACCGCGCGCTTCGCTCAGAGCTCCGCGCTGGGGACGCACGTGCGCCTCGTGCATCTAAGGCTCGCGCGGGACGGGGGGCCGAGGGCGGGGACGGGGAGGTAA
- Protein Sequence
- MEADEKSEKLACCLGCLSSDDDGTLYDYKISNGTLKSIMQVEEICLCYICKHLAQKMELFIQNIQGNQILLENIHNNITTSILETARTQSQLLCLTSTKLDPVELGNGKSKHVDIKLEVKDENGFSNHSGDELVDDDNDFQESLVKEEDDSPLKYLKEDCTVELLSDNLRLLPLKKRLTKKKIGDEKEEDYPLNDLLKDELVAEELEIDFDKSNIRKTKDFRKTKTQDLERKKDLYKTKMVYITREQCMEERVKMAADRKYLNATYKCPDCIKGFYFKEGYDKHMESHSETMGDYECDICKQRMGSKEKLLRHKKCHEVRYKCLDCGLTRINRLTIREHYNAFHLKIHSYRCQHCGKTFTRQVSLWKHISYLHNGDVRVKCQHCQKTYANKTVLKAHMIARHPQELSAGEVIKRFVCQECGMAFKAPSQLRNHSIKHSVHRDYYCVECDKSFKSESAFKRHLKIAAPHINYMELPLPCTSCDKRFAMRRDLERHMNRMHLNIRPFQCDKCDRAYVNNWSLNEHKRFVHDGHKRPLKYPCPMCEKVFDRNQTLKAHVRTHTGERPFACVRCTARFAQSSALGTHVRLVHLRLARDGGPRAGTGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -