Tlin002551.1
Basic Information
- Insect
- Thymelicus lineola
- Gene Symbol
- -
- Assembly
- GCA_963932265.1
- Location
- OZ010681.1:427111-433210[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0012 0.11 13.9 6.7 1 23 200 222 200 222 0.98 2 13 4.2e-06 0.00039 21.6 0.3 2 23 235 256 235 256 0.97 3 13 7.2e-05 0.0068 17.7 2.0 2 23 265 286 265 286 0.98 4 13 0.0089 0.84 11.2 2.7 1 23 292 314 292 314 0.97 5 13 2.3e-05 0.0022 19.3 1.9 1 23 320 342 320 342 0.97 6 13 1.8e-05 0.0017 19.6 8.4 2 23 349 370 348 370 0.97 7 13 5.4e-06 0.00051 21.3 0.6 1 23 376 398 376 398 0.98 8 13 3e-06 0.00029 22.1 0.8 1 23 404 426 404 426 0.98 9 13 0.0013 0.12 13.8 0.6 1 23 432 454 432 454 0.98 10 13 0.0017 0.16 13.4 0.2 1 23 462 484 462 484 0.95 11 13 0.0056 0.53 11.8 0.1 3 23 492 512 490 512 0.96 12 13 0.00029 0.027 15.9 0.3 1 23 537 559 537 559 0.96 13 13 0.00012 0.011 17.0 3.0 1 23 603 625 603 625 0.98
Sequence Information
- Coding Sequence
- ATGGCGACCAAAACtcagaaattaaattttgagAAAATATGTCGAGcttgtttacaaataaaaaaggatATGAGACCTTTGTTTGAACAATTGACTGCGACGATGCTGATGGGAATATCGAAAGTGCAGGTGTCGGTGGGCGACGGGCTGCCGGGGCAGCTGTGCCTGCAGTGCGTGCACCAGATCTCGCGCAGCCACGCCTTCAAGGAGCAGGTGGAGCGCAACGACGCCACGCTGCGGGAGCACGCCAAGCTCATGGCCGAGGAAGCGCTCAAGGTCGATGTCGTGGAGAGTAAGTCCCTGCTGGGCTGCGACAGCTCGCAGTTCATCCAGTTCATCGAGGTGCCGGCGCTGAGCGGTTCCAGCCAGCTGCTGGAGAACTTCTTCACGGCGCCCGAcccgccgccgccgctcgcCGACCCGCCTCCAGCCGCGCACGACACCAAGATCGAGATAGAGCTAGAGGCGAAGCCGTTGGTGGCGGCGCCCGGGGCGGCGAACGGGGCGGCGACCAAGGAGGACGCGCTGAACTCGGACGAGGAGAGCTACCTGCAGATGGTGGTGCTGCAGGCCACGTCGGCGGCGGCGCCCGGGCGGCACGTGTGCACGCTGTGCCACAAGGAGTTCAAGCACGGGCGCTGGCTGAAGCTGCACATGCGCTCGCACGCCAACTGGATCCGCGCCAACTGCAAGAAGCCGCCCTCGTGCCCCGTGTGCGAGCGCACCTTCAAGGGGCCCGGCATGCTCAAGATGCACATGCGCACGCACGAGCAGCGCGCGCCCAAGCAGCCCACGTGCTCCGTGTGCCAGCGCACCTTCCCCAGCAAGACGCTGCTGTACCGCCACCGCCAGACGCACTTCGAGCAGAAGACGCACCAGTGCGTGTTCTGCGACAAGCGCTTCTTCAGCGGGTACGCGCTGCGCTCGCACACGGCGCGCCACCGCGGCGAGCGCCCGCACGTGTGCTCCATCTGCTCCAAGAGCTTCTACAACCCCACCGACCTCAAGGTGCACTTCCGCCTGCACACCGGCGAGAAGCCGCTCAAGTGCTCCGAGTGCAACAAGACCTTCCGCCGCCACTCCACGCTCTGCCAGCACATGAAGAAGCACCGCGGCATCCGCAACCACGTGTGCAAGGTCTGCGGCAAGGGCTTCTACGAGGTGTCCAAGCTGAACGCGCACATGCGCGTGCACACCGGCGAGCGGCCCTTCTCGTGCGGCATGTGCGACCGCAAGTTCGCGCAGCAGTCGGCGCTCATCTACCACCGGCGCACGCACACCGGCGAGAAGCCGTACGCCTGCAAGCTGTGCTCGGCGCGCTTCACCACCTCCTCGGCGCGCAACAACCACGTGCTGACGCACACCGCACACGCGCACAAGCGGTTCGCGTGCCCGGTCTGTTTCAAGGCGTGCGCGTCGCGGGCCGAGCTGCGCGCGCACTCCGCCTCGCACGCGGGCGAGCGGCTGTTCGGCTGCGACGCGTGCGGAGCGCGCTTCGCCTCGCCCGCCGCGCTGGTCGCGCACCGCCGCCACCACGCGACCGCCAGCCCCGCGTCCAGCGCCCCCAGCGCCCCCAccgcgcccgccgcccccgcTGCGTCCGCCGCGCACGCGTGCGCCGTCTGCGGGAAGGGGTTCGCGGAGCTGAGCGCGTACAAGAAGCACGTGAAGAGCCACGCGGGCGGGCGGGCGGAGGGCGAGGAGGGCACGCCCCCGGCCGCCGATCGGGACAAGGCCGAGGACCCGCAGTCCGACCAGGGGGGAAACGCAGAGGGCGGCGCGGGAGCGGCGGGAGGGATGAAGAAGTTCAAGTGCGGCATCTGCGTCAAGAGCTACACGTACCTGCACAGCCTCAAGAAGCACCTGCTGAGCCACGTGCAGATGTGCGTGTTCAGCCCCGACGGCTCCGAGCGCCTGTACGCCTTCAagCAACAGCAGCAACAGGACCAGCtccagcagcagcagcagcaacaaCAGCAGCAGCAGGTCCAGCAAGTGCAGCTGCAGCAGCAGCACGTGCAGCAGCTCCAGCAGCAGGTGCTTCAGGTGGGCGGCGTGCAGCAGCTGGCCGTGCCCATACACGCGCAGCAGCTGCAGCAGGGGATCGTGCAGAGCGGGCAGCACGCGTACCCCGTCATCTCGTCGGTGCAGTCGCTGCAGCTACAGCAGACGCACCAGCTCGTCAACTCGCAGCCGCAGCAGCTGCAGGTGCAGACCATCCAGATCCACCCGCAGCATCAGCCCATCCAGATCCACGCCGTGGGCGTGCAGCAGGTGCAGCAGGAGCAGCTGCACGTGGCCACCTCCTCCTGCCAGACCATGCTGCCCAACATCCTGCAGCTGCAGCCGGGCGCGGTGGCGGTGTCGGGGCTGACGGGGCAGGAGCTGGGCGGCGGCGTGGGGGGGGTGGCGCACCGCATCATCCTGCAGCCGCAGCACCACCCCCACCACCCGCTCTACACCATCCACCACTGA
- Protein Sequence
- MATKTQKLNFEKICRACLQIKKDMRPLFEQLTATMLMGISKVQVSVGDGLPGQLCLQCVHQISRSHAFKEQVERNDATLREHAKLMAEEALKVDVVESKSLLGCDSSQFIQFIEVPALSGSSQLLENFFTAPDPPPPLADPPPAAHDTKIEIELEAKPLVAAPGAANGAATKEDALNSDEESYLQMVVLQATSAAAPGRHVCTLCHKEFKHGRWLKLHMRSHANWIRANCKKPPSCPVCERTFKGPGMLKMHMRTHEQRAPKQPTCSVCQRTFPSKTLLYRHRQTHFEQKTHQCVFCDKRFFSGYALRSHTARHRGERPHVCSICSKSFYNPTDLKVHFRLHTGEKPLKCSECNKTFRRHSTLCQHMKKHRGIRNHVCKVCGKGFYEVSKLNAHMRVHTGERPFSCGMCDRKFAQQSALIYHRRTHTGEKPYACKLCSARFTTSSARNNHVLTHTAHAHKRFACPVCFKACASRAELRAHSASHAGERLFGCDACGARFASPAALVAHRRHHATASPASSAPSAPTAPAAPAASAAHACAVCGKGFAELSAYKKHVKSHAGGRAEGEEGTPPAADRDKAEDPQSDQGGNAEGGAGAAGGMKKFKCGICVKSYTYLHSLKKHLLSHVQMCVFSPDGSERLYAFKQQQQQDQLQQQQQQQQQQQVQQVQLQQQHVQQLQQQVLQVGGVQQLAVPIHAQQLQQGIVQSGQHAYPVISSVQSLQLQQTHQLVNSQPQQLQVQTIQIHPQHQPIQIHAVGVQQVQQEQLHVATSSCQTMLPNILQLQPGAVAVSGLTGQELGGGVGGVAHRIILQPQHHPHHPLYTIHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00167073; iTF_01438233;
- 90% Identity
- iTF_01438233;
- 80% Identity
- -