Tlin001613.1
Basic Information
- Insect
- Thymelicus lineola
- Gene Symbol
- -
- Assembly
- GCA_963932265.1
- Location
- OZ010680.1:8769341-8790049[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.027 36 5.4 0.0 18 44 140 163 134 163 0.85 2 11 4.8 6.4e+03 -1.8 0.1 19 29 200 210 197 220 0.75 3 11 0.67 9.1e+02 0.9 0.4 12 26 221 235 215 243 0.81 4 11 0.00076 1 10.4 0.1 10 28 307 323 303 334 0.85 5 11 0.2 2.8e+02 2.6 0.7 16 33 387 401 380 410 0.75 6 11 0.0016 2.1 9.3 6.7 5 41 405 438 401 439 0.86 7 11 0.00013 0.18 12.8 1.4 16 41 450 472 444 474 0.87 8 11 0.39 5.2e+02 1.7 0.3 17 30 479 492 473 500 0.79 9 11 0.00071 0.96 10.5 2.5 14 40 504 527 492 530 0.83 10 11 0.037 51 5.0 0.2 18 33 536 548 533 558 0.78 11 11 2.5 3.4e+03 -0.9 0.2 8 26 555 572 552 583 0.70
Sequence Information
- Coding Sequence
- ATGAGTTCAACATTGTCTagatctgaaataaaaattgaagACGTGTGCCGTACATGTTTGTCGAAGGAGACTGAATTATATTCCGTGTACGATGTTTGCTTGGGAACGGAGACACTGCACAATGTGATTTCAATACTTACCGGCCTAAAGTTTGAAGCTGGAGATGGGTTGCCCAGTGGTGTTTGTGGTGACTGTAAAGAGAAGGCAACGGTCGCATACGACTTTAAAAGTCGGTCGTTGGAAGCGGACGAGGCTCTCCGAGGTCTTATAACAGTGAAGAATGAAGATATTCCTGTTAAGGAGATTGAGGTCAAGACTGAAGAAGAAGTACCAGCTGATGCTGCCGATGATTATACGGATCTCGATCTTGAGGAACCTCTAACTGATCCAGGCGATGGCATCGAGGTTAGCAGCACATACTGTCCAGTTTGTGGTGAGAGCTATGATGATGCCGCTGGACTTACCAGACATATGTGGCAGAGTCATCCGGACCTCATGGGGCCTAAAAAGCGGGGCAGGCCTAAACAACTACTCACCAGTACAATCCTGAGGAAATTGGAGGAGAATGGATTACATGCAACGATCCGAAGACACTCCTGCGCCTTCTGTCGCGTCAAGACATCGTCGCGGGAAGACCTTGCTCTTCACATGATGCAGCATAAAGatGAAAAGGTATTGAGCTGCTTGCAGtgcaaaaaaatgtatttaacgAAAGGAGATGTGGAGCGACATGTCTGTGGAAATAGAATGAACACAGAACAAGATCAACAGAGTGAATGTTTCGTGGCAGAAATACTGCTGCAAGACTTATTATCGGCTAACAATGATAGCGAGAGCGAAGGCGTGTTGCACGCGTGCGTCAGTTGCGGCGGCGTGTTCCTGTCGGCGAGTGAGTTGGCCGACCATCGCGACACCGACCACCCGGACCAGTCGCTGCGCTGCGGACACTGTCATAAGGTGTTCGCCTCTCTCCGCGGCGCGGCGCGTCACCGCGACTCGTGCGCGTTAGTCGAGCGTTCGTTCGCGTGCGTCTCGTGCGGGTCCAAGTTCCAACACGAGATCACCCTCAACAAACACATCCTGAGATATCACGCCGGACATCCCGTGTCCATACGGTTTAATAATAGGGAGAGTAACGCTAACGACACACCAAAGGAGCCGATCCGTTGTGATACTTGTAATAGGACGTTTCGTaggaAGGAGCAATTGGTGAAGCATATTAAGCTTCATAAATCCGGGGATAAATGCTTCGAATGTGACATTTGCAACAAGAAATTTCACCGTAGGAACAATTTGAGATCTCACATGCGTACGCACGAGGCGCGGCCGCCGCGTGGGTCGAGCAACGCTTGTCTGTGTCTGTACTGCGGTCGTGGGTTCTCTAACTCGTCAAACCTTATCGTGCACATGCGACGACACACCGGCGAGAAACCCTATAAGTGCGACTTCTGTGAGAAAGGTTTCCCCCGCTCGTCAGACTTGCAGTGTCACAGACGGTCGCACACCGGCGAGAAACCGTGCATTTGTGGAGTTTGTGGGAAAGCATTCTCTCGCAGTAACAAGCTGTCGCGTCACATGCGTGTACACACGGGCATCAAGCCGTACAAGTGTTCGTACTGCGACAAGGCGTTCTCGCAGAGCAACGACTTGAATCTCCACGTACGGAGACACACGGGAGACAAGCCGTATGTGTGTGAACTCTGCGGGGATCGATTTATACAGggtaccgcgcttCATAACCATCGTCGTGCCCATGGCCATTTCCCCGTCACACGTGTGATCAGTGGCGGTCCGCAGACAATATCGACGGCCAACGCCACTGAAAGCCTTCCGTACGCCACACTTACACTTACCCCCGACTGA
- Protein Sequence
- MSSTLSRSEIKIEDVCRTCLSKETELYSVYDVCLGTETLHNVISILTGLKFEAGDGLPSGVCGDCKEKATVAYDFKSRSLEADEALRGLITVKNEDIPVKEIEVKTEEEVPADAADDYTDLDLEEPLTDPGDGIEVSSTYCPVCGESYDDAAGLTRHMWQSHPDLMGPKKRGRPKQLLTSTILRKLEENGLHATIRRHSCAFCRVKTSSREDLALHMMQHKDEKVLSCLQCKKMYLTKGDVERHVCGNRMNTEQDQQSECFVAEILLQDLLSANNDSESEGVLHACVSCGGVFLSASELADHRDTDHPDQSLRCGHCHKVFASLRGAARHRDSCALVERSFACVSCGSKFQHEITLNKHILRYHAGHPVSIRFNNRESNANDTPKEPIRCDTCNRTFRRKEQLVKHIKLHKSGDKCFECDICNKKFHRRNNLRSHMRTHEARPPRGSSNACLCLYCGRGFSNSSNLIVHMRRHTGEKPYKCDFCEKGFPRSSDLQCHRRSHTGEKPCICGVCGKAFSRSNKLSRHMRVHTGIKPYKCSYCDKAFSQSNDLNLHVRRHTGDKPYVCELCGDRFIQGTALHNHRRAHGHFPVTRVISGGPQTISTANATESLPYATLTLTPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01438238;
- 90% Identity
- iTF_01439238;
- 80% Identity
- iTF_01439238;