Tlin005776.1
Basic Information
- Insect
- Thymelicus lineola
- Gene Symbol
- -
- Assembly
- GCA_963932265.1
- Location
- OZ010682.1:15913033-15913524[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.9e-09 3e-06 27.8 0.0 1 36 15 50 15 58 0.95
Sequence Information
- Coding Sequence
- ATGCCGCGTAATTATAAGCGGACGACTGATCGTCAATCCTGGAGTGAGGAATCAATGCGTAAAGCTATGGAAGCAGTTCGCAGTAACAAAATGGGCTGGCTTTTAGCGTCGAAGACATTTGGAGTACCACAAACAACACTAAGAAGACATGCTTTGGATAGTAACAAAACTTTGGAGTCCTCTGCAAAGGGTCTAGGATGTTGGAAAGCTACTTTTCCACCTGATGTGGAAAGAAAATTAGTTGAGCATTTGAAATTACTTGAATCTCGTTTGTTTGGACTGACGCGAACGTCTGTTCAAGAATTAGCTTTTGAGTTGGCTGAAAAAAACGGTTTTGCACACAAATTTAACCCGCAAAAACAAAAAGCTGGACAAGAATGGTTAGAAGGGTTTTTGAGacgaaataaagatatttcttTACGTAAACCAGAAGCTACTTCAGCTGCTCGTGCTCAGGCTTTTAATCGACCTCAAGTCAATAAGTTTTTTTGA
- Protein Sequence
- MPRNYKRTTDRQSWSEESMRKAMEAVRSNKMGWLLASKTFGVPQTTLRRHALDSNKTLESSAKGLGCWKATFPPDVERKLVEHLKLLESRLFGLTRTSVQELAFELAEKNGFAHKFNPQKQKAGQEWLEGFLRRNKDISLRKPEATSAARAQAFNRPQVNKFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00373922; iTF_00276271; iTF_00783385; iTF_00323450; iTF_00373915; iTF_00404740; iTF_00373916; iTF_00373917; iTF_00256830; iTF_00373918;
- 90% Identity
- iTF_00373916; iTF_00373917; iTF_00373915; iTF_00373918; iTF_00256812; iTF_00256830;
- 80% Identity
- -