Tlin025396.1
Basic Information
- Insect
- Thymelicus lineola
- Gene Symbol
- -
- Assembly
- GCA_963932265.1
- Location
- OZ010701.1:9327591-9330558[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-08 7.4e-06 26.5 0.0 1 38 53 91 53 95 0.92 2 2 1.2 5.9e+02 1.2 0.0 9 18 96 105 93 106 0.88
Sequence Information
- Coding Sequence
- ATGGCGCCTTCGAGGGCGTCTCTCATGCCGTCAGGAGTGACAGTTGAAGACTTGATGTTTACTCCGCCGTATTTCTATCACATCCCGCCTCCACCACAGCCTCTCAATACTTTTCCTGGAAGAAAAAAACGAAAGCGGaTGCATAGAAAGCTATGGGATCCTGAAGCAATGAAAAAAGCCGTTGAAGCTGTCCGAACTAAAGAAATTGGGTATAAAAAGGCAGATAAGTTATTTAATATGCCAAGAGCTAGTTTAAAAGATTATGTCAAAAAGTCTGATAAATCTATAGAAGATATAGTTTCTGGAAAAATGGGAAGAAAACCGATTTTGCCAGTTAAATTAGAAGAGCAGTTGTTTCTACTGACGATGAAGATAGTGACGACGATGACGCTGAATGCCCAGTATGTCAGAAAAGGTTTTCTCAAGATACAAATGGAGAGAAATTCATAA
- Protein Sequence
- MAPSRASLMPSGVTVEDLMFTPPYFYHIPPPPQPLNTFPGRKKRKRMHRKLWDPEAMKKAVEAVRTKEIGYKKADKLFNMPRASLKDYVKKSDKSIEDIVSGKMGRKPILPVKLEEQLFLLTMKIVTTMTLNAQYVRKGFLKIQMERNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -