Tlin004158.1
Basic Information
- Insect
- Thymelicus lineola
- Gene Symbol
- -
- Assembly
- GCA_963932265.1
- Location
- OZ010681.1:19612135-19614691[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-10 2e-07 31.6 0.0 3 41 21 59 19 61 0.92 2 2 7.3 3.7e+03 -1.3 0.0 27 40 122 135 114 140 0.69
Sequence Information
- Coding Sequence
- ATGCCACGAAAACATAAAAGAAGACCAGAAGTACGCCCCGGGATTATGAAATGGATACAGGAAGCAATGTCGGCAGCGCTAGAAGACTTGAAGAAAAAACATATGGGGGTTAATGAAATTGCAAGACTTTACGGAATTCCCTCTCGTACCCTCCTAAGACATTTTAAGAGCGGAACCAGTGAAATTAAATATATGGaatGGAAAAATTGGGTGAAAGAGTTTCGCCTCGGGAGAGAAACAGTCGAAGACATTTGCCACGACGGTCGACCTGTGGAAGTGCTCACTCCCGAAACGATTGCTCTTATCGAAGAAGAGGTTCTGAGTGACCGCCGCTTGAAGATTAGAGAAATTGCAGCTAGGCTTGGGCTCTCTAAAAGTACCGTTCATCGTGCGATCCATAAACATCGTCACATGAAAAAAGTGAGTGCAAGATGGGTACCGAAACTTCTTTCAGCAGTACAGAGACAGGAAAGAGTGCGCTGCGCTTCGGAGTTTTTGGATCTTTGTGGCGAAAATTCAAAGACTGCGATCGAGCAGCTATTGACTGGTGATGAAACTATGATCTTGTATTATGACCCACAAAGCAAGCGCGAATCAATGGAATGGCGTTATAAGGGTGAAAATCCCCCTAGAAAGGCAAAGGTGCAACAATCGGCTAAAAAACTGGTGTGCACAATCTTTTGGGATTTTCAAGGCATTTTGATGGTGGATTTTAAAGAACGTAATACAGTCGTGAACGGCGAATATCATGCTTccttaatatataaattacgagATAAGATAAAGGAAAAACGAAGAGGCAAGCTCTCTAAAGGTGTCCTGTTGCTCCATGACAACGCCCCTGTTCATACCGCTGGTGTTTCGAAGGATGCAGTTCGTCAATGCAGATGTCAGAAGTGTATTAGTATTCATGGTgattatattgaaaaataa
- Protein Sequence
- MPRKHKRRPEVRPGIMKWIQEAMSAALEDLKKKHMGVNEIARLYGIPSRTLLRHFKSGTSEIKYMEWKNWVKEFRLGRETVEDICHDGRPVEVLTPETIALIEEEVLSDRRLKIREIAARLGLSKSTVHRAIHKHRHMKKVSARWVPKLLSAVQRQERVRCASEFLDLCGENSKTAIEQLLTGDETMILYYDPQSKRESMEWRYKGENPPRKAKVQQSAKKLVCTIFWDFQGILMVDFKERNTVVNGEYHASLIYKLRDKIKEKRRGKLSKGVLLLHDNAPVHTAGVSKDAVRQCRCQKCISIHGDYIEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -