Tlin022404.1
Basic Information
- Insect
- Thymelicus lineola
- Gene Symbol
- -
- Assembly
- GCA_963932265.1
- Location
- OZ010698.1:7419528-7421763[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-11 6.9e-09 36.2 0.0 1 39 8 47 8 52 0.91 2 2 3 1.5e+03 -0.1 0.0 9 18 51 60 48 61 0.91
Sequence Information
- Coding Sequence
- atGCCGAAGAGAAAGCTATGGGATCCTGAAGCAATGAAAAAAGCCGTTGAAGCTGTCCGAACTAAAGAAATGGGGTATAAAAAGGCAGTTAAGTTATTTAATGTGCCAAGAGCTACTTTAAAAGATTATGTCAAAAAGTCTGATACATCTATAGAAGATATAGTTTCTGGAAAAATGGGAAGAAAACCGATTTTACCAATTAAATTAGAAGAGCAGTTGGTAAACTATTGTTTACAAATGGAAAAGAATTACTATGGTGTCACCGCTTCGGACTTAAAACATATGGCTTTTCAATTGGCTATTAGAAATAACATTCCACATCCATTTTCACACACTAAAAAGAAAGCAGCTGACATACAACCTGTTCCAGTTGTTGAGCCTCCTTCAACTTCAACTAGACGAGGCAAAGCTATGGTAGTTACGGCTTCACCGCATAAACAGGAAATAATAGATgcagaaaagaaaaaagaacaaaaagatgAAAGAAGAGCAGGAAAAAAAAGGgttataaatttaaagaaaaatacgaCAGGaagaaacaaaaagaaaacCAATAAGCGACGACGTAAGAATCAATCTTCTGACGAGGACACGTCTGATAAAGATAAAGACTCTCCAATTTTAGTTTCTACTGACGATGAAGATAGTGACGACGATGACGCTGAATGTCCAGTATGTCAGAAAAAGTTTTCTCAGGATACAAATGGAGAGAAATGGATAAAATGCACAAAATGTTTTCAATGGATGCATGAGAATTGTGTTGAAAATCCAGgagtaaattttatttgtgCAATCTGTTTTGAGAATTAA
- Protein Sequence
- MPKRKLWDPEAMKKAVEAVRTKEMGYKKAVKLFNVPRATLKDYVKKSDTSIEDIVSGKMGRKPILPIKLEEQLVNYCLQMEKNYYGVTASDLKHMAFQLAIRNNIPHPFSHTKKKAADIQPVPVVEPPSTSTRRGKAMVVTASPHKQEIIDAEKKKEQKDERRAGKKRVINLKKNTTGRNKKKTNKRRRKNQSSDEDTSDKDKDSPILVSTDDEDSDDDDAECPVCQKKFSQDTNGEKWIKCTKCFQWMHENCVENPGVNFICAICFEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -