Tlin013904.1
Basic Information
- Insect
- Thymelicus lineola
- Gene Symbol
- -
- Assembly
- GCA_963932265.1
- Location
- OZ010689.1:14899687-14904747[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.4e-15 1.7e-12 47.7 0.0 1 41 79 119 79 123 0.89 2 3 1e-15 5.2e-13 49.4 0.1 1 40 164 204 164 208 0.91 3 3 2.3e-16 1.2e-13 51.5 0.0 2 39 273 311 272 314 0.90
Sequence Information
- Coding Sequence
- ATGGTAGGAGGCAAGGACCTGATATTGTACCAGAACTACACATTCTCGTTCCAAGGACCCAAAGATGTGAAGCTTTACCCATATTGTTCTAAGAGAACCAGTGCCAAGTGTCCGGCTCGACTTAAATTGGACAGAGCTGGAAATATCGTATTTGCCAATGTTGCTCATAATCATCCCCCTCCCCGATTAAAATGTTCAACATCTTTGCCACGAGTATCTAAACGTGCTGCGTGGTCAGAGGAAACCTTAGTAGCGGCAATAGATGCTATACGTAGCGGCAATATGTCTTTAGGGAGAGCATCTTCTCGATTTGGCATACCAAAGAGTACACTATATGAACACAATATGAAGAAAGGAAAACTCAAAAAATGTTCAACATCTTCTCGATTTGACACACCAGAGAGTACACAATATGAACACAATATGAAGAAAGGAAAACTCAAAAAACTTTCAACATTTTTACCGCGAGGATTAAAACGAGCTGCGTGGTCGGAGGAAAACTTAGTAGCAGCAATCAATGCTGTACGTAGTGGCCAGATGTCTTCATATAAAGCATCTTCTCGATATGGCATACCAAGGAGTACACTTGCTGATCACATGAAGAATGGAAAACTCAAAATTAAGATGGGAAGACAACCGACATTTACAAAAGACGAGGAGAAAGATTTTGTTCAACTATTAATGAAGTCTTCTAAACAGCAAGGAAAACCCCTCACATCAGATATAATTCAGAGTAAAGCATTTACTTTTTGCGAAGAATTTAATATCCAACTTCCAACATCTTCGCCTCGAATATTTAAACGTGCTACTTGGTCGGATGAAAACTTAGTAGCGGCAATCAATGCTGTACGTAGTGGGAAGATGTCTATACATAAAGCATCTTCTCGATATAGCATACCAAAGAGTACACTTGCTGATCACATGAAGAATGGAAAACTCAAAGGTACACTGGGAAGACAATCGACATTTACAAGAGACCAAGAAAGAGATTTTGTTAAACTAATAATGAAGTCTCGTAAGCAACAAGGAAAACACCTCACATCAGAAATGATCAAGAGTAAAGCATTTgctttttgtcaagaatttaaTATCCGTAACTATTTTAATAAGAAGACTCAGCGCGCCGGAAAGAATTGGCTGCAGTCTTTCTTAAAGAGGAACCCGAAGTTGAAAAAGCATATAACAAAAATctga
- Protein Sequence
- MVGGKDLILYQNYTFSFQGPKDVKLYPYCSKRTSAKCPARLKLDRAGNIVFANVAHNHPPPRLKCSTSLPRVSKRAAWSEETLVAAIDAIRSGNMSLGRASSRFGIPKSTLYEHNMKKGKLKKCSTSSRFDTPESTQYEHNMKKGKLKKLSTFLPRGLKRAAWSEENLVAAINAVRSGQMSSYKASSRYGIPRSTLADHMKNGKLKIKMGRQPTFTKDEEKDFVQLLMKSSKQQGKPLTSDIIQSKAFTFCEEFNIQLPTSSPRIFKRATWSDENLVAAINAVRSGKMSIHKASSRYSIPKSTLADHMKNGKLKGTLGRQSTFTRDQERDFVKLIMKSRKQQGKHLTSEMIKSKAFAFCQEFNIRNYFNKKTQRAGKNWLQSFLKRNPKLKKHITKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -