Tlin019126.1
Basic Information
- Insect
- Thymelicus lineola
- Gene Symbol
- -
- Assembly
- GCA_963932265.1
- Location
- OZ010694.1:14703285-14714663[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.1e-10 1.1e-07 32.4 0.0 4 39 185 221 183 225 0.90 2 4 4.2e-11 2.1e-08 34.6 0.1 3 39 238 274 236 278 0.92 3 4 1.3e-12 6.4e-10 39.5 0.1 4 43 294 334 291 336 0.94 4 4 3.6e-15 1.8e-12 47.7 0.1 3 42 345 385 343 387 0.93
Sequence Information
- Coding Sequence
- ATGCCGGGGCCGGGGCCGGGGCCGCGGCTGTTCAAGTGCGAGCCGCCGTCGGATGACGAGGACGCGCACTACCACCCGCCACATATTGCTGAACAGCAACTCACACCGCAGCTTCTACCTATAAAATTGGAAAGGGAAGGCTCCAACGAAGAGAATGTGTCCACGGACCTCTTACATCATTTACAGCAGTGCCTGGAGGAGCCGCCGGCGCCggccgcgcccgccgccacGCCGGtgcgcgcgccgcccgcgccgcccgccgcgccgctcgACACGCTCGAGACGCTCGAGCCCGCCACGCACGCCACGCACAACGCACACAACGCTCTGCTGGGTTCGAGTCTGCTAGTGGGCCAGGGGGCGCTGGCGGACTGCTCGGACTTCGCCCCGCTGCTCGCTGTCAAGGACGAACCTCTGTCTGAGGGAGAACAGCACCAGCTGAGCGGCGACGACACGAGCGACTCGGGCGGGGGCGGAGGGGGTTGCGGCGGAGCGGGGGGCGTCGGGGTGGGGGGCAGCGCGCGCGGCTCACCCAAGTCCTGGTCGCAGCGGGACATGGACAGCGCACTAGACGCACTCCGGAACCATCACATGAGTCTCACCAAGgcgTCGGCGACGTACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGAGGGCGCGGCCAAGTCGTGGGGCGACGCCGACCTGCGCGCCGCGCTCGCCGCGCTGCGCGACGGACGCATCTCCGCCAACAAGGCCAGCAAGGCTTACGgcatCCCCAGCAGCACGCTGTACAAGATAGCGCGGCGCGAGGGCATCCGGCTGTCGGCGCCGTTCAACGCGGCGCCGACGGCGTGGCGGCGCTGCGATCTGTCCCGCGCGTTGGCCGCCATccgctgcggcgcggcgtcggTGGCGCGCGCAGCGGCTGCGTTCGGCATCCCCACGGGCACGCTGTACGGCCGCTGCAAGCGCGAGGGCATCGGGCTCGCGCGCGCCAGCCCCGCGCCCTGGTCCGAGCGCGCCATGGCCGACGCGCTCGAGGCCGTCAGGGTGGGCCAGCTGTCCATCAACCAGGCGGCCATCCAGTACAGCCTGCCCTACTCCTCGCTGTACGGCCGCTTCAAGCGCTGCAAGTACCAGATTCAGGGTGGCGCTCCGCCCCCACCGcacccgccgccgccgccgccggagCTGTCCCCGGAGCCGCGCGAGCAGTGGGAGCAGGGAGGCTACCCGGCGGCCCCCGCGGAGCCCTACAGCCACATGTTCCCGGAGTGCGAGCAGTACTACGCCTGCAGCCCCATCACCAGTTGA
- Protein Sequence
- MPGPGPGPRLFKCEPPSDDEDAHYHPPHIAEQQLTPQLLPIKLEREGSNEENVSTDLLHHLQQCLEEPPAPAAPAATPVRAPPAPPAAPLDTLETLEPATHATHNAHNALLGSSLLVGQGALADCSDFAPLLAVKDEPLSEGEQHQLSGDDTSDSGGGGGGCGGAGGVGVGGSARGSPKSWSQRDMDSALDALRNHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWGDADLRAALAALRDGRISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRCDLSRALAAIRCGAASVARAAAAFGIPTGTLYGRCKREGIGLARASPAPWSERAMADALEAVRVGQLSINQAAIQYSLPYSSLYGRFKRCKYQIQGGAPPPPHPPPPPPELSPEPREQWEQGGYPAAPAEPYSHMFPECEQYYACSPITS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -