Tact005940.1
Basic Information
- Insect
- Thymelicus acteon
- Gene Symbol
- -
- Assembly
- GCA_951805285.1
- Location
- OX638214.1:16927943-16935855[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.034 3.2 9.3 0.5 1 23 94 117 94 117 0.92 2 10 0.0043 0.41 12.1 0.5 2 23 145 167 144 167 0.93 3 10 0.28 27 6.4 1.3 2 23 190 211 189 211 0.96 4 10 0.00014 0.013 16.8 0.1 1 23 215 237 215 237 0.97 5 10 0.0009 0.085 14.2 0.7 1 23 242 265 242 265 0.89 6 10 0.008 0.76 11.3 1.0 2 23 273 295 272 295 0.96 7 10 0.00046 0.043 15.2 0.8 2 23 303 324 302 325 0.94 8 10 8.2e-05 0.0077 17.5 0.3 1 23 331 353 331 353 0.97 9 10 2.5e-05 0.0024 19.1 1.8 1 23 359 381 359 381 0.98 10 10 3.2e-05 0.003 18.8 3.3 1 23 387 410 387 410 0.98
Sequence Information
- Coding Sequence
- ATGAACGAACCATGTGAACgtAAACGGCATGGAACAAAGGAAGATGTCCtcaaaaactatacactacaaGAATTAAAGACAGAAGTTTATATCGAAAATGTTTTGAATGATTTAAATGAAAGTGTTGATGAGAAATCTCAAGAAAAGAGTAATTTAAAACGACGTGAAAGGAAGCCAGTGATTAAATTCATCAAAGAATTGGATAAACATCGAAACAATATCAAGGAGGTGCTGCTGTGGTCGAATGCCACCGTTATTCGCTCTCATAGTGACCTGGGCTACCTGTGCTTCTTTTGCAAAGAACAATACGTCGATCCAGCTGAATTAAAAAGCCATAATCTTAAACAGCATTGCAGAGACATTACAGCTACTAGGTTTAAGAAACATAGAGATCTTAAAACCTTTTCCGCGAAGCTCGATATTACTAACTTAGAATGCAAAATATGTCATAAAAGCATAGAAACATTGCAGGATCTGTTCGACCATTTGATAAACGAACACAAAAGAAATGTTTTCACAGATATAAAGAATCATATTGTTCCCTTTAAATTTGACACTGAAATCCTCCGATGCGCAGTATGTTCGCTCGAGATTAGTACGTTCAAAAGTCTTTACGAGCACATGCACAAGCACTTCAGGAACTTCGTGTGTGAAATATGCGACGCAGGCTTTATTAATAGAAGAGGTTTAAACTCTCATTTGGACCGTCACAATGTTGGAGAATATTCTTGTGAATATTGCAACAAGGTTTTCGACacgaaaagaaagaaagtggcTCACGAACAGGGAGTCCACGTGCACTCTAACTTAAGGAATAAATGTGGGTATTGCAATGAGAAATTCACTAACCTCCGGAAGAAGGAGCTGCATTTGGAGACGGTACATGGAGCTAAATCAGTCGCTGTACAGTGTCAAGCTTGCAATAAGATGCTGGCAAATCGTGACGCTCTCAGAATACATATTAAAAGACATCATTTAATGGAAAAGCGTCATGAGTGTCCAGAATGTGATATGAAGTTCTTTTCCAACGGAGCCCTCGTGCTCCATATGGTGAAGCATTCAAAAATCCGTGAGTTTGAATGTCAAATTTGCTACAAAAGATATGGGAGAAAGAAAACCTTGCGTGAACATTTGCGTATACATGCAAACGATCGTCGCTACAAGTGCGAATTTTGTGGGATGACATTCGTCCAAAAGTGTAGTTTAACAGGCCACTTGCGTTCCAAACATCCTGAAGAACTAGATGCGTAA
- Protein Sequence
- MNEPCERKRHGTKEDVLKNYTLQELKTEVYIENVLNDLNESVDEKSQEKSNLKRRERKPVIKFIKELDKHRNNIKEVLLWSNATVIRSHSDLGYLCFFCKEQYVDPAELKSHNLKQHCRDITATRFKKHRDLKTFSAKLDITNLECKICHKSIETLQDLFDHLINEHKRNVFTDIKNHIVPFKFDTEILRCAVCSLEISTFKSLYEHMHKHFRNFVCEICDAGFINRRGLNSHLDRHNVGEYSCEYCNKVFDTKRKKVAHEQGVHVHSNLRNKCGYCNEKFTNLRKKELHLETVHGAKSVAVQCQACNKMLANRDALRIHIKRHHLMEKRHECPECDMKFFSNGALVLHMVKHSKIREFECQICYKRYGRKKTLREHLRIHANDRRYKCEFCGMTFVQKCSLTGHLRSKHPEELDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00971625;
- 90% Identity
- iTF_01439323;
- 80% Identity
- -