Tact017181.1
Basic Information
- Insect
- Thymelicus acteon
- Gene Symbol
- -
- Assembly
- GCA_951805285.1
- Location
- OX638224.1:3367397-3384066[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00029 0.028 15.8 0.6 2 23 41 63 40 63 0.95 2 11 1.3 1.2e+02 4.3 2.9 1 23 67 89 67 89 0.96 3 11 1.1e-06 0.0001 23.4 0.9 1 23 94 117 94 117 0.97 4 11 0.34 32 6.2 0.2 3 23 123 144 121 144 0.90 5 11 0.016 1.5 10.3 0.2 2 20 155 173 155 175 0.95 6 11 6.3e-05 0.006 17.9 0.6 3 23 185 205 185 205 0.97 7 11 0.0011 0.1 14.0 0.1 2 23 226 248 225 248 0.96 8 11 1.4e-05 0.0013 19.9 5.8 2 23 260 281 259 281 0.96 9 11 0.00041 0.039 15.3 2.6 1 20 287 306 287 309 0.93 10 11 6.1e-06 0.00057 21.1 2.0 1 23 315 337 315 337 0.99 11 11 0.043 4 9.0 3.9 1 23 343 366 343 366 0.86
Sequence Information
- Coding Sequence
- ATGGGGCACGAGGTATACTGTTTAATGTGTCTTGGGACAGGGATCAAGATGAATCAAATGAACTCGGCGATGATAACAAAATACAATGAATTAATGCTAAGACGAGAATATGGAAATATGAAATGTGACATCTGTCTATTCAGCTTCAGTGACAAAGCATCTCTCAGCAAGCACTGGACAATGAGCCATTCATGGAAATTTACCTGTAAGACTTGCTCTTATATATGTTTTAATGGTAATCAAGCAAAAACTCATATAGAATCACACAATGGCAAGAAGTACATATGTAAGGACTGTGGGGAGTCATTcaggtttCCAAATACCCTGTCAACACACATTCGGAAAAGACATAATATGGAGCTTGCTTGTGAATTTTGTGGTAGTATGTTCGCATCAGCGGCAGGAATTaagattcataaaatattatgtcacaaaaagGAAAAGAACGAGCACCTAGGTCCGCAGTGCGACGAGTGCGATGTACACTTCGCCTCTGAGCGGGCGTGGAAGAGGCACCGCGTGCTGTGCTCCAGACACGAAGTACACAACGGTTGCGGAGTCTGTGGCGAGACTTTCTCGACAAAACAGGAGTTGAAGAGTCACTCAAAGGAACATGGACAACGGAAGACCACGCTTGATTCCCAGGCTCGCCATGTTATGGACTTCAATCCAATACCCTGTACACTTtgtAACAAAGAAGTACCCAGCAGAAATGCGTACGTAAAACATATGAACACCGAACACCCAGAGACAAATAAAGAGTTAACGTCTACGTGTGTTTGTGAAGTATGCGGCAAGGCATTCAAGCACCTTTCGTGCCTCATTTCACACCAACGAAAACATACGGACGAAAAGCCGTTCAGTTGTCTGCATTGCAGTAAGAAGTTCAAGAACGAATACACTCTTAAAGTGCATCTTCCTGTACATACCAACGAGTATTCTTTCAAATGTCACCTGTGTGAGAAGGCGTTTAGCGACAGGGGCAGACTTAATGCACACGTTAAGCGTCATCTAGGCGTCCGACCATATAAGTGTTCCTACTGCGAAAAATCCTTTGCGTTCCAGTGCGAAGAAAGAATTCACACGAAATACGTACACTATAAGGAACCCTATCCCAAGCGGGAGAGGAGAAAGAGAAGTGTTAAGAAGAAAAACATGAATGAATGA
- Protein Sequence
- MGHEVYCLMCLGTGIKMNQMNSAMITKYNELMLRREYGNMKCDICLFSFSDKASLSKHWTMSHSWKFTCKTCSYICFNGNQAKTHIESHNGKKYICKDCGESFRFPNTLSTHIRKRHNMELACEFCGSMFASAAGIKIHKILCHKKEKNEHLGPQCDECDVHFASERAWKRHRVLCSRHEVHNGCGVCGETFSTKQELKSHSKEHGQRKTTLDSQARHVMDFNPIPCTLCNKEVPSRNAYVKHMNTEHPETNKELTSTCVCEVCGKAFKHLSCLISHQRKHTDEKPFSCLHCSKKFKNEYTLKVHLPVHTNEYSFKCHLCEKAFSDRGRLNAHVKRHLGVRPYKCSYCEKSFAFQCEERIHTKYVHYKEPYPKRERRKRSVKKKNMNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -