Tact005941.1
Basic Information
- Insect
- Thymelicus acteon
- Gene Symbol
- -
- Assembly
- GCA_951805285.1
- Location
- OX638214.1:16936856-16943804[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.032 3 9.4 0.5 1 23 93 116 93 116 0.91 2 18 0.012 1.1 10.7 0.4 2 23 144 166 143 166 0.93 3 18 0.56 53 5.5 1.3 2 23 189 210 188 210 0.96 4 18 8.2e-05 0.0077 17.5 0.2 1 23 214 236 214 236 0.97 5 18 0.0042 0.39 12.2 1.4 1 23 241 264 241 264 0.88 6 18 0.18 17 7.0 1.2 2 23 272 294 271 294 0.96 7 18 0.00023 0.022 16.1 1.1 2 23 302 323 301 324 0.95 8 18 8.7e-05 0.0082 17.5 0.4 1 23 330 352 330 352 0.97 9 18 0.17 16 7.1 0.7 1 23 429 452 429 452 0.91 10 18 0.0019 0.18 13.2 0.3 2 23 479 501 478 501 0.95 11 18 1.1 1.1e+02 4.5 2.3 2 23 524 545 523 545 0.96 12 18 0.079 7.5 8.1 0.0 1 23 549 571 549 571 0.95 13 18 1.9 1.7e+02 3.8 2.6 1 19 576 594 576 596 0.87 14 18 0.031 2.9 9.4 1.5 2 23 607 629 606 629 0.95 15 18 0.00011 0.01 17.2 0.9 2 23 637 659 636 659 0.95 16 18 3.9e-05 0.0037 18.5 0.9 1 23 665 687 665 687 0.97 17 18 4.4e-06 0.00041 21.5 1.4 1 23 693 715 693 715 0.98 18 18 0.00013 0.012 16.9 4.0 1 23 721 744 721 744 0.98
Sequence Information
- Coding Sequence
- ATGAGCGCACCAGATGGTAAACTTCCCGGAACCCATGAAGacatcttcaaaaatgataaacTAAGAGCATTGAAAACGGAAGttaatattgaaactgttttaAATGAGTTAGATGAGAGTGATGAGGAGATCTCTCAAGAAATAGGTTATTTAGAAATAAGTAAAAAGAAGCCGGAGATTGAATTAATCAAAGAGTTAGATAAACATCGAAACAATATCAAGGAGGTGCTGCTGTGGTCGAATGCCACCGTTATTCGCTCTCATAGTGACCTGGGCTACATGTGCTTCTTTTGCAAAGAACAATACGTCGACCCAGCCGAGTTAAAAAGCCATAATCTTAACCAACATTTCAGAGATATTACAACAGCTAGGTTTAAGAAACACAGagatataaaatcattttctatGAAGCTTGACATTACTGAATTAGAATGCAAAATTTGTCATAAAAGCATTGAATCACTGCAGGATCTGTTCGACCATTTGATAAACGaacataaaagaaatattttcacaGATATAAAGAATCATATTGTTCCCTTTAAATTTGATACTGAAATCCTCCGATGTGCAGTATGTTCGCTCGAGATTAGTACGTTCAAAAGTCTTTACGAGCACATGCACAAGCACTTCAGGAATTTCGTGTGTGAAATATGTGACGCAGGCTTCATCACTCGGAAAAGTCTAAACTCTCATTTAGATCGTCACAAAGTTGGAGTCTATTCTTGTAAATATTGCAAGAAGGTTTTTGACACGAAAACAAAAAAAGTGGTACACGAACAGGGGGTCCACGTGAACTCCAACTTAAGAAATAAATGTGGTTTTTGTAATGAGAAATTCACTAGTGTGAGGAAGAAGGAGTCGCATTTGGAGACGGTGCATGGAGCTAAATCAGTCGCTGTTCAGTGTCAAGCTTGCGATAAGATGCTGGCGAATCGTGATGCTCTTAGAAAACATATCAAAAGACACCACTTAATGGAAAAGAGTCATGAGTGTCCAGAATGCGATATGAAGTTCTTTTCCAACGGCGCCCTCGTGACCCATATGGTTAAGCATTCAAAAAGCCGTGAATTTGAGTGTACGGGACGTAACACCAAAACTGTAAACAGATCGACAAAAATCAAGGATGACCCGAATACATTAGACGAAAGTGCCAAAATAGTGAAAATAGAAGTTGAAGATAAACCTAAAAAGGGAGGAGAGTTGCAAAAGCATCGAAATAATATGAGAGAAATACTAATGAATTCTAATGCAACGCCAATCAGGTGCAGAGGTGGCATCGGATACGCGTGCTGTTTCTGTACGGATCAATTCCCAGACCCGGCTGATCTAAAAAAACACACTATTGACTCACACgacgaaaaaactaaaaacaactTCATGAAAGCAAAGGACATGtataaactgcatgtaaaactCGATATCACGGATCTTAAGTGTAACATTTGTAACAAAAGTATTGACACATTAGAAAAATTAATCGATCATTTGAAAAATGATCACAAAAGGAACATGCATACAGATATTAAGAACCAAGTGCTACCATTCAAGTTTGATTCTGACAATTTAAGGTGCTTTATGTGCTTGAACGTGTTTCATAAATTTAAGATGTTGTTAGAACACATGAATATACACTATAGGAATTATATTTGTGAAATATGTGATGCTGGATTCGTCAGTCGCGTGATTCTTGCACAGCACGCGCAGAGTCACAAACTAGGAAAGTTCAAGTGTGATTTCTGCCTAAAAGTATTCGATACGTTTAGGAAGAAACGGTCACATGAAAAGTGCGTCCATACTCACTCGACGACGCTCAACAAATGTGGCTATTGCAACGAGAAGTTCAAAGATTATCGAAAGAAGGAGCAGCACTTGGCTAAAGAACACGGAGTTCAGATCAAATCCCTTTCTTGTCAAGCGTGTGACAAAACATTTAGCAACCAGAAGGATTACACAGTCCATGTTAAGAGACTACACTTGATGGATAGGCGATATAAATGTACGGACTGTGACATGACATTCTTTTCAGTATCAGAATTGAAAAATCATGTCGTGAAACACACTGGAGTGAGAAAATTCGTGTGCGAAGTATGTCACAAGGCGTACGGAAGGAAGAAGACACTCAATGAACATATGAGGATTCATGCTGACGATCGTAGATTTAAATGTGAACACTGTGGAATGGCGTTTGTGCAAAAATGTAGCTGGCGTGGCCACATGCGCTCTAAACATGGAAAACAAGTGTAG
- Protein Sequence
- MSAPDGKLPGTHEDIFKNDKLRALKTEVNIETVLNELDESDEEISQEIGYLEISKKKPEIELIKELDKHRNNIKEVLLWSNATVIRSHSDLGYMCFFCKEQYVDPAELKSHNLNQHFRDITTARFKKHRDIKSFSMKLDITELECKICHKSIESLQDLFDHLINEHKRNIFTDIKNHIVPFKFDTEILRCAVCSLEISTFKSLYEHMHKHFRNFVCEICDAGFITRKSLNSHLDRHKVGVYSCKYCKKVFDTKTKKVVHEQGVHVNSNLRNKCGFCNEKFTSVRKKESHLETVHGAKSVAVQCQACDKMLANRDALRKHIKRHHLMEKSHECPECDMKFFSNGALVTHMVKHSKSREFECTGRNTKTVNRSTKIKDDPNTLDESAKIVKIEVEDKPKKGGELQKHRNNMREILMNSNATPIRCRGGIGYACCFCTDQFPDPADLKKHTIDSHDEKTKNNFMKAKDMYKLHVKLDITDLKCNICNKSIDTLEKLIDHLKNDHKRNMHTDIKNQVLPFKFDSDNLRCFMCLNVFHKFKMLLEHMNIHYRNYICEICDAGFVSRVILAQHAQSHKLGKFKCDFCLKVFDTFRKKRSHEKCVHTHSTTLNKCGYCNEKFKDYRKKEQHLAKEHGVQIKSLSCQACDKTFSNQKDYTVHVKRLHLMDRRYKCTDCDMTFFSVSELKNHVVKHTGVRKFVCEVCHKAYGRKKTLNEHMRIHADDRRFKCEHCGMAFVQKCSWRGHMRSKHGKQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -