Tact005935.1
Basic Information
- Insect
- Thymelicus acteon
- Gene Symbol
- -
- Assembly
- GCA_951805285.1
- Location
- OX638214.1:16901215-16904190[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0012 0.11 13.9 1.2 1 22 28 49 28 51 0.90 2 18 2 1.9e+02 3.7 0.1 2 23 77 99 76 99 0.90 3 18 0.048 4.5 8.8 4.3 3 23 124 144 122 144 0.96 4 18 0.026 2.5 9.6 0.4 1 23 148 170 148 170 0.96 5 18 0.0025 0.24 12.9 0.3 1 23 176 199 176 199 0.97 6 18 0.0016 0.15 13.5 1.3 2 23 207 229 206 229 0.95 7 18 1.1e-06 0.0001 23.4 1.0 2 23 235 257 234 257 0.97 8 18 0.4 38 5.9 0.9 1 23 263 286 263 286 0.91 9 18 0.0092 0.87 11.1 0.1 1 16 292 307 292 308 0.94 10 18 0.0092 0.87 11.1 4.1 1 23 448 471 448 471 0.97 11 18 5.3 5e+02 2.4 0.2 3 23 499 520 498 520 0.81 12 18 0.0055 0.52 11.8 0.2 1 23 568 590 568 590 0.96 13 18 0.0035 0.33 12.4 2.3 1 23 595 618 595 618 0.92 14 18 0.013 1.3 10.6 1.2 2 23 626 648 625 648 0.95 15 18 0.00029 0.028 15.8 1.7 2 23 656 678 655 678 0.94 16 18 5.3e-06 0.0005 21.3 2.1 1 23 684 706 684 706 0.98 17 18 4.8e-06 0.00045 21.4 0.8 1 23 712 734 712 734 0.99 18 18 6.7e-05 0.0063 17.8 4.6 1 23 740 763 740 763 0.98
Sequence Information
- Coding Sequence
- ATGCAGAAGCAGTGGCATAACTTGACCACGTTGCTCAAATACTCGAACGCAACTCCGTTCAAAGACAGAAATGATGCTGGATACGTCTGCGCGTACTGCTACAAGACATATCCCGACCCTGACACGTTACGGAATCACAGCACACATGATCATGTTAGGGAAAAACCGTCGTACAAAGCCTGCTCGGGCATGAGCAGTTTTGTAGCGTTCCTAGACATTGTAGACTTAAAATGCACAATCTGTAATCTCCCCATGGATAGCATAAGAACTTTGACCGAGCACTTAGTTAAGGTTCACGAAAAGAAGTATTATCTAGAAGTTACCGATTACTTCCAGCCCTTCAAGTTAACGAATGAGCAGCAAATGAACTGCTGCCTCTGCAACGAAGTGTTTCACAACATGAAGCTGTTGATGCAGCATATGAACAATCATTTCAGGAATTTTATTTGCACTGTGTGCGGTGCCGGATTCGTGAATAGCTTTCGACGCAATCGGCATGAGACCACGCACGCTAAGAAATCGAGCTTCTCGTGCAAGTATTGCGGGCAGATTTTTGCTGCGGAATCGAAAAAAAAGGCCCACGTGAATACCGAGCACAAGGGTATAGCCGGCGACAGTGTATGTCAAATTTGCAAGGCGAGGTTCAAAAACTATTATCAGAAGACGAGACACATGATGCAAGTACATAATGTCGAAGGAATCAAATGTGACAAGTGCGATAAGAAGTTTAATTTGAAGTCTAATTTGATTCTTCACATGCGAAGCGTTCATTTAAAGGAACGTCCATTTGAATGTTCTGTGTGCAACATGGGATTCTTCATCAAGAGGCATATGATAGGACATTACATGGCGACTCACACGAACGAAAGAAAGTTTAAGTGTGAAGTATGCGGGAAAGCCTATGCAACCCAGAATAGTTTGGGCGGCGACACTACATTGGAATGTCATTCCATATTACAATCGAGAATCAAATACCATAAAGATAATGTACAGAAACCAACAACTCCTGGAAATGATTGGAGTGTCACGATAGCTAAGAAAAATCAGGGATCGAAAGAAGTAATTGAAACATTTACTACCAAACCGGAGACACTAAGACTGGcattcaataaaaacaaaagaacAAGAGCTGTAAAAGACTTACAAACTGTCAACGAGTCTTTACAAAAAATTACGTCGAAAGCTGTGGTCGTCTCACCAGTAAAGCAATCTATTAGACTAGCCTTTAATAAATTAGAAACTAACAAGATTACAACGGAATTACATAAACATTTGTACAACATTAGAACTATTCTACTAAATTCTAATGCAACACCAATCAAGCACCATAACGGCATGGGCTATGTTTGTGgatattgtaatttttgttgTGAAAAGCCTGCAGATCTCAAAACACATACTTTAAAAACACATGATGTTTCTGAAAAAGAGAAATTCATGGAACAGACAATTTTGTCGGTATACATAGTTATGATTGACATAACTAACCTGCTGTGCAGTATATGTGGTAAAGATATCGAAGGATTGGAACAGATAATGAGCCATCTTCACCAAgagcataataaaaatatttttagcgaTATCAACAATCGTATAGTTCCATTCAAATTTCATGGGGACTCTATGAGATGTTGTATTTGCACCAGCCTGTTTGGAAGCTTCAAAGTTTTGCGTCAGCATATGCATACGCATTACGCAAATTTCGAATGTAATGTGTGTTCTCAAACGTTTATCACACAAAGAATTTTGAAGATCCACGCATTAGTTCATAAAAAAGGTGAATTCAAGTGCTCTTACTGTCCAAAAACGTTTGAAGTGCAAAGTTCCAAGTATAATCATGAAAAGTTTGTTCACATGGATATTAAATTGAGAAACAAATGTCCGTATTGCGATAAAAAGTTTATGGCTTACAGGAGTAAACGTGAGCACATGGAAAAAGAACACGGGGTTGAGCCACAAGTGATTCGTTGCATGGCATGTGACAAAACGTTCTCAAGTAAAAGCAGATTGACGATTCACACTAAGCGGTCCCATTTGATGCAAAGGGATTATTCATGCAAAGTTTGCGACATGAAATTTTTTTCTCGTTCGGAGCTGCGCAATCATATGTTAAAACACACGGGCGAGAAACCATACAAATGTGATGTATGTTCAAAGTCGTATGGACGAAAAAGCACCTTGCGGGAACACGCGCGTATCCATTTGAATGATCGCCGATTTAAGTGTGACCATTGTGGAGTAGGATTTGTTCAAAAATGTTCATGGAGAAGTCATATGAGGACTAAACACTCTGAAGTTATTTAG
- Protein Sequence
- MQKQWHNLTTLLKYSNATPFKDRNDAGYVCAYCYKTYPDPDTLRNHSTHDHVREKPSYKACSGMSSFVAFLDIVDLKCTICNLPMDSIRTLTEHLVKVHEKKYYLEVTDYFQPFKLTNEQQMNCCLCNEVFHNMKLLMQHMNNHFRNFICTVCGAGFVNSFRRNRHETTHAKKSSFSCKYCGQIFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDKCDKKFNLKSNLILHMRSVHLKERPFECSVCNMGFFIKRHMIGHYMATHTNERKFKCEVCGKAYATQNSLGGDTTLECHSILQSRIKYHKDNVQKPTTPGNDWSVTIAKKNQGSKEVIETFTTKPETLRLAFNKNKRTRAVKDLQTVNESLQKITSKAVVVSPVKQSIRLAFNKLETNKITTELHKHLYNIRTILLNSNATPIKHHNGMGYVCGYCNFCCEKPADLKTHTLKTHDVSEKEKFMEQTILSVYIVMIDITNLLCSICGKDIEGLEQIMSHLHQEHNKNIFSDINNRIVPFKFHGDSMRCCICTSLFGSFKVLRQHMHTHYANFECNVCSQTFITQRILKIHALVHKKGEFKCSYCPKTFEVQSSKYNHEKFVHMDIKLRNKCPYCDKKFMAYRSKREHMEKEHGVEPQVIRCMACDKTFSSKSRLTIHTKRSHLMQRDYSCKVCDMKFFSRSELRNHMLKHTGEKPYKCDVCSKSYGRKSTLREHARIHLNDRRFKCDHCGVGFVQKCSWRSHMRTKHSEVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -