Tact031022.1
Basic Information
- Insect
- Thymelicus acteon
- Gene Symbol
- -
- Assembly
- GCA_951805285.1
- Location
- OX638239.1:7910515-7912843[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0053 0.5 11.8 2.4 1 23 110 133 110 133 0.94 2 13 0.0044 0.41 12.1 0.3 1 21 191 211 191 212 0.96 3 13 2.9e-05 0.0028 18.9 0.9 3 23 239 260 238 260 0.95 4 13 0.37 35 6.0 5.6 1 23 269 291 269 291 0.98 5 13 0.00052 0.049 15.0 1.8 1 23 299 322 299 322 0.95 6 13 0.00075 0.071 14.5 1.2 1 23 328 350 328 350 0.98 7 13 4.1e-05 0.0039 18.5 2.7 1 23 356 378 356 378 0.98 8 13 1.8e-06 0.00017 22.8 1.8 3 23 386 406 384 406 0.96 9 13 1e-05 0.00095 20.4 0.4 1 23 412 434 412 434 0.99 10 13 2.4e-08 2.3e-06 28.6 0.4 1 23 440 462 440 462 0.98 11 13 9.6e-05 0.0091 17.3 0.7 1 23 468 490 468 490 0.98 12 13 0.00012 0.011 17.0 3.4 1 21 496 516 496 518 0.96 13 13 5.9e-06 0.00056 21.1 0.1 1 23 524 546 524 546 0.98
Sequence Information
- Coding Sequence
- ATGGAATCCACTGTAAAACCGCATGTTAATTCAATTTGCCGCGCGTGCTTAGCCGATTCAGGGAATATGAGGCCGCTTTTCGATAAAATGGAAGGCGACGATAGAACCCTTTTCGAAGTGCTTTCTTTCGTGACCAATATTAACGTATCCTCAAGCGACAGCTTCCCTAAGCAGCTCTGTGACGGTTGCTACAATCTGATGTGCAAAACAGATGAGTTTAAGAAAACGTTTATGAAATCGGAGAGagttttaaaagttatgttCAAAAGTGGTAACGTTACCGACAATGGCGTTAAAGTTGAAGCCAGCAAGTCTGGTTTGGAGCCCTTTCAGTGCACGATATGCTTCGAGAAGTTTATGACCTGTGCTTCTTTGGAATCCCATGTAATGTTCAGTCACTATTGTGTCAAAGACTCGAATAAAGAGTTGGAAAGCTTCGATGAAATACCTGGCGAAGATAAACCTTACGAGGTAAAGGAAGAAAGTGAGATGGCGGGAGATTATGCAGATTACTTTGATGTAGACACCAGTTATGCGGAAGCAGAGTATAAACAAGAAGATGAGAATAAATTCGAATGCAACGCATGTGGCTTGCCATTCATACATGAAAAAGACTACaaaacgcatattaaaaactgcAATGATTCAATAGATCGTGTGCCGTTACGAACGAAGTTTAAAAAATCCATAAAACAagtaaagaagaaagaatcttGTGTAAAATGTGATGCAAGTTTCTCGACATTAAAATCTTTGAGACGTCATCAAAGAGAAGTGCACAAGGATGAAACGGAAGAAGAAATCTACCATTGCACAACCTGCATGCGTTCCTTCCTTCGCAAGAACTCATTTCTATCCCATATGAAGATGCACGAATCTAAAGACCATTTAAAGTATGTGTGCAACACATGTAAAAGAGAATTTCAGCACCAAGCTCATTTGGATAACCACATATTAGCCGTACACACTCGAGACAAGGGTTATAGCTGTGAAATCTGTAGCGTAAACTTTACAACTTTAGAATGTCTGAACATTCATAAAGCGACGCACAAAGTTGAGAAGAAACATCAATGTCAGCTCTGTAACAAGGCTTTTCAGATGATGTCGACGCTGAATGAACACATGCGGACGCATACGGGCGAACGGCCTCACTTGTGTTCCATATGCGGACGAGGGTTTACACAAAAGAATAACTTGGAGCAACATGTGAGACGGCATAAGGGTCTTAAGCCTTTTAAATGTGACACGTGTGAACGAAGATTTGTATCCAAAGGAGAATTAGTTGCGCATGCGCGCAAACATAGCGGAGCTCATCCCTTCGTCTGTGACGACTGCGGCAAAGGTTTCACCACTTCCTCTTCCCTGGTGAAACACCGGAGAATCCACACCGGTGAAAGACCATACGCCTGCGATCTTTGCTCCATGAGATTCTCCGCTTCTGGCACGTTGAAGAACCATCGAAGAACTCACACCGGTGAAAAACCATACCAATGTTCTCACTGTGAAAAAGCATTTGTACAACGACAAGACTTAGTGTCCCATATACGGTGCCACACCGGTGAAAGGCCGTATGTATGTGCTAATTGTGGCCAGGCCTTTAGAAAGGCCTCGGCGCTGAAGACTCATGTGAAAATACATGGTAAAGATGGTAATTCTTCACTGACGTTGTCATCGTTGCAAGATGTTAATGCCTTATTAACCCATCATGTCAGCTAA
- Protein Sequence
- MESTVKPHVNSICRACLADSGNMRPLFDKMEGDDRTLFEVLSFVTNINVSSSDSFPKQLCDGCYNLMCKTDEFKKTFMKSERVLKVMFKSGNVTDNGVKVEASKSGLEPFQCTICFEKFMTCASLESHVMFSHYCVKDSNKELESFDEIPGEDKPYEVKEESEMAGDYADYFDVDTSYAEAEYKQEDENKFECNACGLPFIHEKDYKTHIKNCNDSIDRVPLRTKFKKSIKQVKKKESCVKCDASFSTLKSLRRHQREVHKDETEEEIYHCTTCMRSFLRKNSFLSHMKMHESKDHLKYVCNTCKREFQHQAHLDNHILAVHTRDKGYSCEICSVNFTTLECLNIHKATHKVEKKHQCQLCNKAFQMMSTLNEHMRTHTGERPHLCSICGRGFTQKNNLEQHVRRHKGLKPFKCDTCERRFVSKGELVAHARKHSGAHPFVCDDCGKGFTTSSSLVKHRRIHTGERPYACDLCSMRFSASGTLKNHRRTHTGEKPYQCSHCEKAFVQRQDLVSHIRCHTGERPYVCANCGQAFRKASALKTHVKIHGKDGNSSLTLSSLQDVNALLTHHVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00971546;
- 90% Identity
- iTF_00795882;
- 80% Identity
- -