Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 4.2e-17 3.9e-14 53.0 0.0 1 40 35 75 35 77 0.90

2 2 4.4e-14 4.1e-11 43.3 0.0 1 40 131 171 131 175 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	4.2e-17	3.9e-14	53.0	0.0	1	40	35	75	35	77	0.90
2	2	4.4e-14	4.1e-11	43.3	0.0	1	40	131	171	131	175	0.91

Coding Sequence: ATGGAAAACTCAAAAGTAAACTGGGAAGAAATCCGACATTTACTGAAGACCAAGAGAGAACTTTTAACATCTTCGCCTCGAGTATTTAAACGTGCTACTTGGTCGGAAGAAAACTTAGTATCGGCAATCAATGCTGTACGTAGTGGTAAGATGTCTATACATAAAGCATCGTCTCGATATGGCATACCAAAGAGTACACTTGCTGATCATATGAAGAATGGAAAACTCAAAGGTACACTGGGAAGACAATCGACATTTACAAGAGACGAAGAGAGAGATTTTGTTAAACTACTAATTAAGTCTTCTAAGCAACAAGGAAAACCCCTCACATCAGAAATGATCAAGAAACGTTCAAAATCTTTGCCCCGAGTATTTAAACGTGCTGCGTGGACGGAGGAAAACTTAGTAGCGGCGATAAATGCTGTACGTAATGACAAGATGACTTTAGTTAGGGCATCTTCTCGATTTGGCATACCAAAGAGTACACTTGCTGATCACATGAAGAATGGAAAACTCAAAGGTAAACTGGGAAGACAATCGACATTTACAAGAGACGAAGAGAAAGATTTTGTTAAACTACTAAGGAAGTCTTCTAAGCAGCTAGGAAAACCCCTCACATCAGAAATGATCAGGAGTAAAGCATTtactttttgtcaagaatttaaTATCAGTAATTCTTTTAGTAAAATAGAATATTTGCCGTCAAAAGACTCGAAGAGGTTGATAATGTATCAGAACTACACATTCTCCTTCAGTGACAAGAAACACTTGAAATGTTCGAGGAAGCTGAGAGGCAGATGTCCAGCGAAGTTAATGGTTGATGACACTGGTCGAGTGCTCTTTGCTAACACCAAACATAATCATCCACCACCCATGTTTCACGTTACATCCGCTGGAGAATACGTGAAAATTAGTAACTAA
Protein Sequence: MENSKVNWEEIRHLLKTKRELLTSSPRVFKRATWSEENLVSAINAVRSGKMSIHKASSRYGIPKSTLADHMKNGKLKGTLGRQSTFTRDEERDFVKLLIKSSKQQGKPLTSEMIKKRSKSLPRVFKRAAWTEENLVAAINAVRNDKMTLVRASSRFGIPKSTLADHMKNGKLKGKLGRQSTFTRDEEKDFVKLLRKSSKQLGKPLTSEMIRSKAFTFCQEFNISNSFSKIEYLPSKDSKRLIMYQNYTFSFSDKKHLKCSRKLRGRCPAKLMVDDTGRVLFANTKHNHPPPMFHVTSAGEYVKISN

Sequence clustering based on sequence similarity using MMseqs2