Tbat019608.1
Basic Information
- Insect
- Thyatira batis
- Gene Symbol
- -
- Assembly
- GCA_905147785.1
- Location
- LR990515.1:3119217-3126336[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.2 2.4e+02 3.0 1.2 1 23 257 279 257 279 0.75 2 14 0.57 43 5.3 1.5 3 17 315 329 314 330 0.88 3 14 0.71 53 5.0 2.1 1 19 336 354 336 355 0.96 4 14 0.38 28 5.9 0.9 1 23 373 396 373 396 0.91 5 14 0.33 25 6.1 0.2 2 20 434 452 433 454 0.89 6 14 3.7 2.8e+02 2.8 1.3 1 8 741 748 741 759 0.79 7 14 0.0005 0.037 14.9 0.4 2 23 804 825 803 825 0.96 8 14 3.3 2.5e+02 2.9 1.4 1 23 846 867 846 867 0.92 9 14 0.00015 0.011 16.6 0.4 2 23 954 975 953 975 0.97 10 14 2.6e-07 2e-05 25.3 2.9 1 23 981 1003 981 1003 0.98 11 14 0.00062 0.047 14.6 0.8 1 23 1008 1030 1008 1030 0.97 12 14 0.0031 0.23 12.5 4.1 2 23 1037 1059 1036 1059 0.95 13 14 4.1 3.1e+02 2.6 1.7 1 10 1066 1075 1066 1075 0.96 14 14 0.00015 0.011 16.6 0.2 3 23 1098 1119 1097 1119 0.97
Sequence Information
- Coding Sequence
- ATGGCGGAGTTTGTTAAGAAAAGAAGTCGAAAATCCAAATTGGTGCCACGTATATATGATTTGGACGACTGTGTAAACGAAGACGACGTTGGCAGTACAAGTGAAAAGGCTAAACCATCAAAATTACTGAAAATTAAACTAGAACATGCTAATGAGGATTACAATTCTGATGATTTTATGGCAAATCCCTTACAAAATTACATGTCTTCCCCATTACAAAATTACATGACTACTACTCCAGAAAATTACACACAATCATCACCTATGGAGTTCTCTATTAAGGTGGAAGTCGAAGAATTCAATGAGCTGGACATCAAGGAGGAGCATGACACACCGGAAAATATACCCCATAACTCTAAACCATCTATATCAGACTTCGACATCAATAAAGAGGCAGACATGTTATTAATGCAAGCTGAAAACATAGATTTAAATACAAACTCCTTACAAGAATGCTCCAATTCTCAAATGGCATCAGAATTGTCTTCTGACACCTCACAAGATTTAGTTATTGATGAGCCTCAACTTGACCAGAATGAAGAAGGAGTTAAGTACTACTCGCTGTCACTACAAGACATTTTAAACTACCAGCCTGATCCGACAGATGTTGCGGGCAAAATGCTATGCATAGAAATTAGGAATTACTTAGGTAGATTAAACAGGTTTTATGGAAAGAATGACCCGATTGACCGTCACAATAAGCTGATTCAAGCAGCTTTGGGAGACAAAAAAATAACATTAACTCCTTATAGAGATATCATATTTATGTATAAGTGTTATATATGCGACAAGGCTTGGTGGCATTTGTATCCTTTCCAGGATCATATAAAGCAGCATAATGCACATGATTTGATGGTCAGCTTAGAGGAGGAGCCTTACAAGAACAATCTTGTAGCGTACATAGGAGAGATACCTTATAGAGAATTGGAGATTGAATCAGATTGCTGCCATTGCGGCAAGGCTTACAGTGACCATAAGATGTTTGAGCGTAAAGGTATTAGTTATTTCACTTGTAAACATTGCGAAGGACAGTTCTATACATGTATTCAGCTGATGGTACACGAAGGTGGGTGCTATTGGAGACAAAACAGGTCCTCCATAGACGAAGCAATAATTTTCAACTGCCGTTATTGCTCTACCATGGTGTTTAGCGAGAGTGATATGAACAAACATTTAGTTCTGCGGCACTCTGTCAGATCTGATACACCTATGCCAAAGTATTTTAAACTCTGCCCGTACTGCAAGGAGAAATACTACAATTTCAATCTTCACACGTGTCAGGTGCGTTCAGACACTCAACCATGTGTGTTTTGCAACAGGAAATTCAGAACGAAGATATTGTGGGATAGTCATATAAGTTTATATAAAACTGATGTTGATTGCCCTATATGTGATGATGTACTGCCCAAAGAATGCATGATGTCCGAGCATTTACTCCAGAAACATAGCGATGACTTCCAATTTGTATCAAAATGTATGATTTGCCCCGGTTTCATAGTATTTACAAATGAGGATTGTCAAAAAGAACACAGACTATTATTTCATAGGAATAATTGTGACACCAGGGGTCGGAAACTCACTAGTTTGTTTGATTTGGTCCTTGTACCAAAAAAACTAATGATCAACCCAATATATAAATATAATGAAGGCTTACTGAAACAACCTTTCGGATGTCCTACGAGAGTGATTCCTATTGAGCCAGAGGCCCCACATAAGTGTGGCCCCAAGCGGAAGGCCACAATACAGAGACTAAGTAGACGCATTATAGAACTGCCAGAACCTACCGCCTCAACATCTACCGCAGTAGTAAAAGGAGATATAGTAACAGACATATCAGAAAATAATTCAATCATAAATAAATTATCTAATAAAATAACTAGCCCACCAGATTCAAAACTTGTTAAAGAAAAAAATAAAAAAATTGTCCATGTTGAATTAATAAAAATAAAAAATGAAATGGAAGAGATCGATTCGACTGTTGCAGAAAATGTACAAGAAAGCAATGTTGTTGATATAAAAGAAGAAATTCAAGATACAGAGGCTTTAAATGATGATGAATACCAAAACTTGTTGTCAAACGTATTCAAGATGTCTGAAAACTACGAAAAACCTAATGCCATCAAGTTGGAATGTGACGAAGTAATTCCACCTTTAGAAGAAGATATTAACATTAGCAAATTCGAACCTGAAGTAATATTGCGCCAGGACTTAAGAAGGATCTATAAATGCAATAAATGCGGCTACAAGAACTACCACAGAGAATACAAATTACACTTAGAGAATAAATGCAAAAAAATAGAAAATAATGCCTATAAAACTGGTGATTATTTGTGTACAAAGTGCAATAATAGTTATAACAGTTTCAAATCTTATTTAAAACATTTTGTTCATCACAATTTCTCGTATCTCAGTTGCCCGGAGTGTTCGGAAGTGTTTGATACAATATTTAATTTAAAGGCACACGTGAACCATCATATAAGGAACAGTTATGTGAAGTTGTTAGTGATTAGTCGTACGAAGAATCAGAGCAAAGTGTTTCAGTGTAAAAAGTGTAAAGGGAAAGTGACTTTAAATAATTTCTTTGCACATTGGGAGTCGCATTTGGACATAGATATGGTTGGTCCACTCTACCATGTGGTTGTAAATGAGAAGCATGTCTCCACAGCCCTCGAGCCTGATGTACTTAAGGAGTTGCTCTTTCTCCTAGTTTCATCAGAGCATGGGTGTAAACGCTTGAAGGAACATAGATGTTGCGTCGTATGCCGCAGACATTTCGAAAGGGTGAATGACTGTAAAAGGCATTTTGTTGAGCATCTACTGGTCGACGCGTACGCGAATAAGCCAACGAACAATTCGTTGAAATGTCAAATATGCTCGGAGGGGTTCCGCAAGGCGGACGCATACAAACAGCACATGAGAGATCACGGCTCATTGCCGATATATAAGTGTGAGTTGTGCGACAAGACATTCAGTGATTCAAGTAATTTCACTAAACACAAGAAAATACATAATCTCCGGGTGCACATATGTGATATATGTGGGAAGAAGTTTCAAGCTAAAATCTCCATTGAGAAACATATGCAGATGCATCTAGTGACAGACCCAATAGAATGTACACACTGTTCAAAGATATTCCACAGCGAGTCCTCCTACAAGAAACATGTGAGAGGCTTCCACAACAAACATCTACCGAAATTTAAATGTTCTATGTGTACTAAACGTTTCCTCTGCCTAAAAGATAAATGGGACCATCTGTGGTTGGTTCATAAGGAACGGACTCATCAAGCCGATTGTCCTGTCTGTGAGAAATCCTTCAGAAAATACAGCGATGTGAAAGCTCACGTGAAATCTGAGCACAATTTAGGTGTAACAGTGTTTAATATGAAGTTATTTGACACAGAAGAGAAGAGGCAGATGGCGGAGGCTTTGCAATTGTCCCTGAACAAATGTAGGGAAGAATGCGAGAGTTTAGGTAAAGATGAAACGTTAATTGTTTTTGAATAG
- Protein Sequence
- MAEFVKKRSRKSKLVPRIYDLDDCVNEDDVGSTSEKAKPSKLLKIKLEHANEDYNSDDFMANPLQNYMSSPLQNYMTTTPENYTQSSPMEFSIKVEVEEFNELDIKEEHDTPENIPHNSKPSISDFDINKEADMLLMQAENIDLNTNSLQECSNSQMASELSSDTSQDLVIDEPQLDQNEEGVKYYSLSLQDILNYQPDPTDVAGKMLCIEIRNYLGRLNRFYGKNDPIDRHNKLIQAALGDKKITLTPYRDIIFMYKCYICDKAWWHLYPFQDHIKQHNAHDLMVSLEEEPYKNNLVAYIGEIPYRELEIESDCCHCGKAYSDHKMFERKGISYFTCKHCEGQFYTCIQLMVHEGGCYWRQNRSSIDEAIIFNCRYCSTMVFSESDMNKHLVLRHSVRSDTPMPKYFKLCPYCKEKYYNFNLHTCQVRSDTQPCVFCNRKFRTKILWDSHISLYKTDVDCPICDDVLPKECMMSEHLLQKHSDDFQFVSKCMICPGFIVFTNEDCQKEHRLLFHRNNCDTRGRKLTSLFDLVLVPKKLMINPIYKYNEGLLKQPFGCPTRVIPIEPEAPHKCGPKRKATIQRLSRRIIELPEPTASTSTAVVKGDIVTDISENNSIINKLSNKITSPPDSKLVKEKNKKIVHVELIKIKNEMEEIDSTVAENVQESNVVDIKEEIQDTEALNDDEYQNLLSNVFKMSENYEKPNAIKLECDEVIPPLEEDINISKFEPEVILRQDLRRIYKCNKCGYKNYHREYKLHLENKCKKIENNAYKTGDYLCTKCNNSYNSFKSYLKHFVHHNFSYLSCPECSEVFDTIFNLKAHVNHHIRNSYVKLLVISRTKNQSKVFQCKKCKGKVTLNNFFAHWESHLDIDMVGPLYHVVVNEKHVSTALEPDVLKELLFLLVSSEHGCKRLKEHRCCVVCRRHFERVNDCKRHFVEHLLVDAYANKPTNNSLKCQICSEGFRKADAYKQHMRDHGSLPIYKCELCDKTFSDSSNFTKHKKIHNLRVHICDICGKKFQAKISIEKHMQMHLVTDPIECTHCSKIFHSESSYKKHVRGFHNKHLPKFKCSMCTKRFLCLKDKWDHLWLVHKERTHQADCPVCEKSFRKYSDVKAHVKSEHNLGVTVFNMKLFDTEEKRQMAEALQLSLNKCREECESLGKDETLIVFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -