Tbat019653.1
Basic Information
- Insect
- Thyatira batis
- Gene Symbol
- -
- Assembly
- GCA_905147785.1
- Location
- LR990515.1:679398-694519[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0016 0.12 13.3 0.9 1 23 407 429 407 429 0.97 2 12 3.4 2.5e+02 2.9 4.2 1 23 436 458 436 458 0.98 3 12 0.32 24 6.1 1.2 1 23 462 484 462 484 0.90 4 12 0.01 0.77 10.8 4.1 1 23 489 512 489 512 0.94 5 12 0.047 3.5 8.7 0.2 2 23 520 542 519 542 0.91 6 12 4.4 3.3e+02 2.5 3.2 2 20 551 569 550 570 0.92 7 12 0.59 44 5.3 0.0 2 19 581 598 580 600 0.93 8 12 0.0084 0.63 11.1 6.3 1 21 609 629 609 631 0.96 9 12 6e-05 0.0045 17.8 0.2 3 23 659 680 657 680 0.94 10 12 0.23 17 6.6 1.8 1 12 686 697 686 699 0.90 11 12 3e-05 0.0022 18.8 1.9 1 23 1107 1129 1107 1129 0.97 12 12 0.004 0.3 12.1 2.3 1 23 1135 1158 1135 1158 0.97
Sequence Information
- Coding Sequence
- ATGAAAATGTTATTCTGTCGAGGATGTCTCGCCACGGACGCGCGACTGTTCGACATGCGGCAAAACGGGCTGATGGAGGCCTATCGCACTTTATTATGTTCTGCGGGGATTGTATCTGATGACCTCCCACATTACATCTGCAGCTACTGTGCCGCACTCCTACTCAAGTGTGACTCATTCAGAATCAAGTGTATAGACTCACTTATCATTGTTAAAAACGCACAACAGGATAATTTAGATCTGACCACAAAAAATATAAAAATTGATGGATGTGCATTTCTCAAACAAACCGTAGTAAATAGTCTAAGTATACTTGATAAAACACCTAAAAGTAAATCATTAGATACTTCCATAGAATTTCCTCTAGACGATGATATCTCTTCTGGACCAGATATAGATTCTGACTCATCTATAGATCTCAATTCAATTGATAAGAGTGATTATACAAGTGATGATGAAATAAAAATCACTACAAAAGATTCTAAACACAATAAAGATACAAAACAATCTGATAGCGAATATCAAAGATTACTATCCAAATATTTAACTAAAGACAATGGTGGTTTACTAAAAGATTTTAACGTTAACATAGACAAATCGAAACATCGCAACGCAAAAAATATTAGGAGCAAACTAATGCAGAGTTTATCAGAAATAATCAAACATATACAGTATTCTAGTGAAACAAGTAATGAGTTATTTGGAATTTTAGACGAAAATGATCCATGTAAAGATAAAGTACCAACTTCAGTTAAAAACAGTGAAATAGATATTCCAAAACAAGAATACACACCTATTCTTAAACAGGAAGTTAAAAAAACTGAAATAAAACCAACTTCGGATACAAACGTAGAAAATACGGATTTGAAACCTAATATAAATGATAATAAAGTCAAAATTGAAATAGACATTGAAGATTCTATAGAAATGGATACGGTCAATGATAATTTAGACTCAGACGACGAAAAAGTTATTGCGGATTTACCAAAATCTAAAGTTAAGAAAGCTAATATAAAAGAAAGTAAGACCAAAAAAGTTTCGCAAAATAAAAGCAGCAAAAATATAAGTAGTGTATTTAAAGGGACTCAAACGAAGAAAATGAAAAATGCAGTAGAATTATACGCTACGTATAATACAGATGTTAGATATTTAACTAAGGAAGAGCAAATTAATGAGATTAAAGACAGAAGACAATCGGATAACTATATAAAAGGGAACTTCAAATGTGAGATTTGCTTCAAAGGATTTAATGCACGAGAAACGTATGAGAATCATATGACTCTGCATGATGATATCAGCGGTAAGTTCGTCTGTGACGTATGTCACTGTCACTTGGGCAGTAAGGCGAGGCTCTTAGGACACCAGAACCGGCACGCCAAGATCTTCACCTGCAAAGACTGTGGACACATCACTAGAAGTGGTTCCCTCGCAGCACAACACCACGAATGGCACAAAGGCAAGAAATACACATGCAAGGATTGTGGCAAGGAATTCCAAAATAGATCTAGCCAATACGGGCATAAGAAGATTTGTCATCCGACGAGCGAACAGCTCGTGCGCTGCGAGATGTGCGGGGACTCCTTCAACGGACTCTCAGGCCTTCAACACCATGAAATTTATGCACACAAAGAGAAAAATACGTCAGAGTGTTTCTGTACCGGTTGCGGCACCCAGTTCTACTGCTCAGATGCGTTCAAAGCCCATCAAGGAGCCGACGGAGCGTGTTCATCGCGAGCTAAGTATTGTGTGCGCTGCGGCGGCGCCTTCCGCACGCAACTGCAGCTGGAGGAGCACGAGGCTGAGCAACGGAAACAGAAAATGCAATTTAAATGCGATCTGTGTACGAAAACGTTTAAGCAATTCGTTAAATTAAAAATGCATCAGAGATGTCATAGATCTACGTATGCACTAGAAGCGAAACGGAACTATGAGAGAAAGAAAGAGAGGGAAGAGAACGGCGCCAGTGAAACGATATGTGAGATTTGCGGGAAGTTATTTAGGAACGCCAGTCTTCTGAGGTCACATTATACATCAGCTCATTCAACAGCCAAGCCGTATAAATGCACCATTTGTTCAAAGGCATTTAAATTCTCTACTAGGGCGTCTGAGGCCAGTCGGTCGGCGCAGAGGGAGAAGGTGGTGTCTGAGACCGGTCGGTCGACACCGGGGATGGAACCGAGAGTCTCGGAGAAATCCATCCCAGTAGAACGCGAGCTCCGAGCCCGCGCGCTGCTGCTGTCTGAGATTGACTCGGACAGTAGCATGGCGTCGATCTCGTCTGGAATGGAGGAAGGCCGGCAACGGCGAAAGAGGCCAGCTGGCCTTGAGTCTGTTTTGTCTTCGCCCAAAGGGGCGGCGCACAAGACTAAAAGGTGCAGGGGCCGACCGCCAACTCCTAGTGCGTTCACCAGTAGTTGGCGACTTGACTCCGTCAAAAATGACGGGTCTAGGTTGGAGGCGGAAGAGCGCGTAGCGGCCCTCGATAAGAGCCTGAGCGACTCGCGTCAGGCTTGCCGCTCTGCCCTCGACCCGCCGTCTGCGAACGAAAACACACCGGAGTCCATGGCTGCGCTCATTAAATTAATGACGGACGCAGCTATCAATGTGGAGAAGGTGGTGGCGGCATCATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTGCGGGCATGAGGGCACGCACAATTACGGAGGAGGTGGCGCACCTCGAGGCGGCCAATGCAACGCTCTCCTCACAAGTTGAGGAGCTGCGCAAGGAGGTAGCCGAGATGCGGAGCCAGTCGGCTGCCGTGGCGCAACCTGCGCCCCGTGACGCTGCTCTCAAAGACCTCCTCGAGGAGGTCTCCCGCGCTAACATTGTCCAGCTCGGGGCAATGTTAAACGCGAGGTTTGAGGGCATTGAGGATCGCCTCCTTCCGGAGCGCAGGTTGAGGCCTCTTCTGGCAGCTGACAGGCGAAGGGAAGAGGTTGAAGCAGCTGCCCATGCAGTAGCAGACAACAGCACCCAGCAACCCTCGGGCTCCAGAATCCCTCTTGACTCGACAAAGCCGCTGGGCACTCCTCCCATGCCAGCCCAGCCCGTTAAAGGCAAGGGCACTGGCCGTGGGAGGAAGTCACTAGCGGCCAAAGAAAAGGAGGCGACAATGGCGGCAAGAGAGGCCACAAAGGCGGCTGAAGAGTCCTTGGCCCCTAAACCTGGCTCTTCTTCAACTTGGAGTGAGGTCGTGAAGCGCAATCCCAAAGCTGGTGAAAAGGTACACACCAGGGTACACACAGGGGAGCGACCGTATAAATGCGAGCATTGTCCTAAAGCATTCCAGAACTATCCAAATTTAAAACGACATAATTTAGTACATACAGGGGAACGTCCCCATTCCTGCGAGGTTTGCGGGAAGGGATTCCAAAGTAGGGGCTGTGTCAAAATGCATGTGAAAACTGTGCATATGAAGATACCCATGCCCCCTAGAAATAGGAACAGAAAGAAGAAAAATGAATAA
- Protein Sequence
- MKMLFCRGCLATDARLFDMRQNGLMEAYRTLLCSAGIVSDDLPHYICSYCAALLLKCDSFRIKCIDSLIIVKNAQQDNLDLTTKNIKIDGCAFLKQTVVNSLSILDKTPKSKSLDTSIEFPLDDDISSGPDIDSDSSIDLNSIDKSDYTSDDEIKITTKDSKHNKDTKQSDSEYQRLLSKYLTKDNGGLLKDFNVNIDKSKHRNAKNIRSKLMQSLSEIIKHIQYSSETSNELFGILDENDPCKDKVPTSVKNSEIDIPKQEYTPILKQEVKKTEIKPTSDTNVENTDLKPNINDNKVKIEIDIEDSIEMDTVNDNLDSDDEKVIADLPKSKVKKANIKESKTKKVSQNKSSKNISSVFKGTQTKKMKNAVELYATYNTDVRYLTKEEQINEIKDRRQSDNYIKGNFKCEICFKGFNARETYENHMTLHDDISGKFVCDVCHCHLGSKARLLGHQNRHAKIFTCKDCGHITRSGSLAAQHHEWHKGKKYTCKDCGKEFQNRSSQYGHKKICHPTSEQLVRCEMCGDSFNGLSGLQHHEIYAHKEKNTSECFCTGCGTQFYCSDAFKAHQGADGACSSRAKYCVRCGGAFRTQLQLEEHEAEQRKQKMQFKCDLCTKTFKQFVKLKMHQRCHRSTYALEAKRNYERKKEREENGASETICEICGKLFRNASLLRSHYTSAHSTAKPYKCTICSKAFKFSTRASEASRSAQREKVVSETGRSTPGMEPRVSEKSIPVERELRARALLLSEIDSDSSMASISSGMEEGRQRRKRPAGLESVLSSPKGAAHKTKRCRGRPPTPSAFTSSWRLDSVKNDGSRLEAEERVAALDKSLSDSRQACRSALDPPSANENTPESMAALIKLMTDAAINVEKVVAASSXXXXXXXXXXXXXXXXXXXXAAGMRARTITEEVAHLEAANATLSSQVEELRKEVAEMRSQSAAVAQPAPRDAALKDLLEEVSRANIVQLGAMLNARFEGIEDRLLPERRLRPLLAADRRREEVEAAAHAVADNSTQQPSGSRIPLDSTKPLGTPPMPAQPVKGKGTGRGRKSLAAKEKEATMAAREATKAAEESLAPKPGSSSTWSEVVKRNPKAGEKVHTRVHTGERPYKCEHCPKAFQNYPNLKRHNLVHTGERPHSCEVCGKGFQSRGCVKMHVKTVHMKIPMPPRNRNRKKKNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -