Tbat018770.1
Basic Information
- Insect
- Thyatira batis
- Gene Symbol
- -
- Assembly
- GCA_905147785.1
- Location
- LR990500.1:2056301-2064533[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00064 0.048 14.6 0.7 1 23 367 389 367 389 0.97 2 11 0.036 2.7 9.1 0.2 2 23 397 419 397 419 0.96 3 11 0.17 12 7.0 6.6 1 23 423 445 423 445 0.97 4 11 5.2 3.9e+02 2.3 0.2 2 10 487 495 486 509 0.71 5 11 0.11 8.3 7.6 0.5 1 22 602 623 602 627 0.92 6 11 0.00016 0.012 16.5 0.4 2 23 646 668 646 668 0.97 7 11 0.46 35 5.6 1.0 3 23 689 710 687 710 0.94 8 11 0.0022 0.16 12.9 0.8 2 23 724 745 724 745 0.97 9 11 0.009 0.67 11.0 0.2 2 23 751 772 750 772 0.94 10 11 0.035 2.6 9.1 6.5 1 23 778 800 778 800 0.96 11 11 1.6e-06 0.00012 22.8 1.3 1 23 806 829 806 829 0.98
Sequence Information
- Coding Sequence
- ATGGTGGCCTATTGTTGTGTAAAAGGATGCCACAATAATAGTAATCATAAAAAGAAAGATCCAAACTTTGTGTTATCATTTCACGCGTTCCCTTCAAACCCAGAGCATAAATTGAAATGGCTTCGAGCGATAGGGCGACCTGACTGGGAACCTCCAGGTCACAGTCGCGTCTGCAGCGCTCACTTCAGCTTTGAACAGATCAACCATGATACCTGCCGGGCAAGAATCAAAGACGATGCATTTCCCGTCTTTGCATTACCTCTAAACTCAAATTTTGAAGCGTCAGATTTAGAAGTATGCAGGATCTGCCTAGCCACTGATCTCAAGATATACAGCCTAAAGGATGGTTACCTGAAGACAGCTATTGAATCTGTTGCTGGATTTAATGACAACTACAACATAGAGGGTCTTCCTCAGTTTGTGTGTTACGAGTGTGCCGCCAGCCTGGTGAAATGTTACAGGCTTATTGAGAAGAGTATGATTGCTCAGGCGACATTATTAGATATATTTGCTGAGAATGGTCAGATTACAAAAGGCTTGGTAAACAATCAAAACAGAAAACAGTTGAATCTAAGCTCACCTTTGACCTATTATAAAGTGAAAGACGATCATGAATATAAGTATGAACATGAAGACAAACTTTTACAGGATAATATACATAATTATGACTGCAAGATTAATATACATGTAGAACATTTTGAAATGAGTGGAACTGAAACCGATATTATTGAATCAGAAGCATGTAATATAGTAAAAACTGACAATGTGGTTTCAAATATTAATAATGATGATTCAAATTCCCTGGTAGATTCTGATTATGTAATTAATGATGAAGGCAATGCAATTGATGATGGAAACAGTTCTCCCATTGATGATGATATATCTGATGACGATGTTAAACCTAAGAAAATATCAAGGAAAAAGAAACACAAAGAAAGTGTGGTGACAAAGAAATCCAAAAGGAAGAGTGTTGACGGATTGACACCAGATGAAGTTGATATGCAGAAGTATTTTACCATTGTGAGATTATCTCTAGAAGAGCAAATAGAGCAATGGGATAGATATCCAATGAGACGTCAGCTCACAAGCGAAACTTTATACGAGTGCGAAGTATGCTCGAAGATATTTGCACATGTCACCTCATATAGAAATCATATCGCCAACCATGATCCTAGCCGTGGCAAAGCTGTGTGTCCAGTGTGCAAGCTACGCTTCAAAAGCGACGTGCTAGTCAAGTATCACCTGAATAGAGCACACGCTAAGAAGTTCCACTGTAAAACATGCCATAAAGTGTTTAATAATGTTGGTGTAGCGAAGAAGCACCACCGCTGGCACACAGGCTACAGGTACAAGTGCCGGCACCCCGCCTGTTCCTTCTCCAGCGCGCACGAGTCCGCCGCCACGCTGCACGCGCACGCGCACGCGCACGCGCACGCGCACCAACCCACCTCGGCCTGCGCGTGCGCACTGTGTGGACGCACCTTCCTCGGAACCAAGGGACTAGCTTTACATACGGCTGCTGCGCATAGGGATCATGTTATGGTAAGTGTTAGATGTTATTTTTGTTGGAAAAAACCCACCTCTGAGTCCGCACTGTGTGGACGCACCTTCCTAGGACGTAAGGGACTTGCTCTACATACTGCAGCTGCACATAGAGATCATGTTATGGTATTAATGCTGGAGAAAATACCCACTTCTGAGTCCGCACTGTGTGGACGCACCTTCCTCGGACGTAAGGGACTCGCTCTACATACGGCTGCTGCTCATAGGGATCATGTTTTGGATATAAAAGCTGATAACGCGTACCATTGCGAACAATGCAATCTGAATTTTAACTCTGAGGGGGCGAGGAGGGTGCACCTATTGACTTCGCCACAGCATAAGAAGAAATCTGATTTGTGCGACACAACTCAAAGCGACCCCAGTCTTCAGAGGACTTGCAGTAAATGTGGTGTAGAGTTCAAGTCTTTAAGGGAACTGATTGCCCATACAAAGACTGATCACCCTCGGTCCTCTCAGAAGAGGACTATGTACCGACTCCCTGATGACAATTATCCAACTGCCTGTGAACATTGCGGTGAAGTGGTGAACAGCCGGTTAGAGCACTGGCGACATGTGCGACGCGTTCATCCGCGCCTGAGCCACGCCTACCGACCCGTCGTCACCGCCGTCTGCGATACTTGCGGGAAGGGATTCCAGAATACAACAAAGTTGTCCGTCCATCGGTTGCGTCACGGTCGTCCCACGGTCCGGTGCGGCCGCTGCCCGCAGTTATTCTACGACAAGTATGCCCTGCGGCGTCACTCGGCGGTACATTCCCCCGCCAGGCCCCACTGTTGTCGCATCTGTGGACGAGGGTTCAAACTTAAGTGTTACCTCGACCGGCATGCCAGGGTACATACAGGAGTTACGCCATACGAATGCACGATATGTGATAAAAAGTTTAAATTCTCGACCAGTCTCAACCTACACGTACGCACAGTACACTACAAACTTCCCCACCCGCCGAGGAAGAAGCGAACCAGCAAAACCGCCGCAAATACGGACTCAGTTGTTGCGAATAATGATAATGTTATTTAA
- Protein Sequence
- MVAYCCVKGCHNNSNHKKKDPNFVLSFHAFPSNPEHKLKWLRAIGRPDWEPPGHSRVCSAHFSFEQINHDTCRARIKDDAFPVFALPLNSNFEASDLEVCRICLATDLKIYSLKDGYLKTAIESVAGFNDNYNIEGLPQFVCYECAASLVKCYRLIEKSMIAQATLLDIFAENGQITKGLVNNQNRKQLNLSSPLTYYKVKDDHEYKYEHEDKLLQDNIHNYDCKINIHVEHFEMSGTETDIIESEACNIVKTDNVVSNINNDDSNSLVDSDYVINDEGNAIDDGNSSPIDDDISDDDVKPKKISRKKKHKESVVTKKSKRKSVDGLTPDEVDMQKYFTIVRLSLEEQIEQWDRYPMRRQLTSETLYECEVCSKIFAHVTSYRNHIANHDPSRGKAVCPVCKLRFKSDVLVKYHLNRAHAKKFHCKTCHKVFNNVGVAKKHHRWHTGYRYKCRHPACSFSSAHESAATLHAHAHAHAHAHQPTSACACALCGRTFLGTKGLALHTAAAHRDHVMVSVRCYFCWKKPTSESALCGRTFLGRKGLALHTAAAHRDHVMVLMLEKIPTSESALCGRTFLGRKGLALHTAAAHRDHVLDIKADNAYHCEQCNLNFNSEGARRVHLLTSPQHKKKSDLCDTTQSDPSLQRTCSKCGVEFKSLRELIAHTKTDHPRSSQKRTMYRLPDDNYPTACEHCGEVVNSRLEHWRHVRRVHPRLSHAYRPVVTAVCDTCGKGFQNTTKLSVHRLRHGRPTVRCGRCPQLFYDKYALRRHSAVHSPARPHCCRICGRGFKLKCYLDRHARVHTGVTPYECTICDKKFKFSTSLNLHVRTVHYKLPHPPRKKRTSKTAANTDSVVANNDNVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437118;
- 90% Identity
- iTF_01437118;
- 80% Identity
- iTF_01437118;