Tbat011589.1
Basic Information
- Insect
- Thyatira batis
- Gene Symbol
- -
- Assembly
- GCA_905147785.1
- Location
- LR990492.1:8520575-8523799[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00036 0.027 15.4 0.2 2 20 189 207 188 209 0.92 2 11 1.1 80 4.5 0.7 2 23 259 280 258 280 0.95 3 11 2.1 1.6e+02 3.5 2.3 2 12 289 299 289 311 0.84 4 11 5 3.7e+02 2.4 0.8 3 23 319 340 318 340 0.87 5 11 0.025 1.9 9.6 1.5 1 23 345 367 345 367 0.94 6 11 1.1e-05 0.00085 20.1 3.7 1 23 373 396 373 396 0.97 7 11 2.6e-05 0.0019 19.0 2.8 2 22 403 423 402 423 0.94 8 11 0.0017 0.13 13.2 1.8 1 23 430 452 430 452 0.94 9 11 0.00014 0.01 16.7 4.8 1 23 458 480 458 480 0.97 10 11 0.0013 0.094 13.7 5.5 1 23 486 508 486 508 0.95 11 11 0.12 8.9 7.5 1.8 2 19 515 532 514 537 0.86
Sequence Information
- Coding Sequence
- ATGTCGCAACCAATTCAAACCCGTACTTGTCGTATATGCCTTGATACAGATTGTACAAGCATTGTTTGTTTAGATGATGAAAATGATTGTTTGGAATTGCTTGAGTTTTCAGTTGGTTTGGTTCTAAAACCAGAAGACAATCCTCGGGTACTCTGTGCTCAGTGCGCTGAACAAGTAAAGTCTTATGCCGAGTTCAAGAAACAATGTTACAAATCTGATGTGCTTTGGAAATCTGTGGTTAAATTTGAAGCGGAGTGTTTTGAAAATAATAATTTACCAAAAACAGTTAAAGATGAAAAGGAATATTCTGATGGTGATCTCGATAATGACAATAGTCCAGAAATTGAAACATACTTTGAGAGTAGTAACAATATAGCAGACCAAAAAGTTTGTAGCGGGGATGGTAAATATATGTATGTTAATAATGGCATAGAGTTCAAATCAAAAGCAAGGTGTAAACGCAGTACCTGTGATGTAAACGCCACAGATTATGATGAAGCCAAAAAATATGAGACAATAAAGAAATCAAATATTGATGTCAATAATATTGCAGATGGTCATCTTATATGTTCAAAATGTAGTAAAGTGTATGCGAATAAGAAATGGCTTCAACGACACGTCACCATGTGTTGTGGAAAATTTAAAAAGGACACAGGAGTTACAAATATTAAGGCCAATAATAAAGTATTACTTTGTGGTATTTGTGACTTTGTAAATTCCGACGTTGGCATATTAAACCAACATGTTAATGAACATTTCATAAACAATGAACTCAATTGCAAGTTATGCAATTTTACTGGATATGATTTGGCTAGTATGGAGTCTCATAGATATAAACATGTGTCAAATAAACTTAAATCCCGTAAATGTCACGAATGCAATAAAACATGTGGTTCGCCATTGTCGCACGAGTTTCACTATAGATCAGTGCACTTGGGCAAACCAGGAGGCGTATGCACTTTATGCAATAACAGAGAGTTTAAAGTTTTCAAAACGTGGAGACGACATGAAATGGCCCATACTGTTACCAAATATATTTGCGACCACTGCGGGAGAAAATTCTTATACAGATATATGATTGAAAGCCATTTGATGGATCACTCTGACGTGAAGAACTATTGCTGCCATGAATGTGGCAAGAGGTTCAAGCGAGCGCAAGGTTTGAAGCTTCACGTATCAACAGTTCACGTTAAAACTGGACCGCTTAATTGCACCCATTGTACTAGAGTGTTCAAAAGCCCTCACACTCTAGAAAAACATATGAAAAGGATGTTGGCTGAGAAATCCTATCGGTGCGAGGTGTGTTTAAAATGTTACGCCTCTGAGAAAGCTTTGAAGAAACACGAGTATTGGCACTCTGATGAACGGCCGCACTGTTGCGATATTTGTGGATCGAGTTATAAAGCTAAAAGTCAATTGAAATTGCATATGAGGAAGCATACGGGGGAGAAACCATACTTGTGTTTCCAGTGCTACAAGACATTCCATTCTTCTTCACAATTAAAGAGACATAAAAGTGTTCACACGGGTATCCGACCGGTCAAATGTACAAGTTGCGATAAAACTTTCTATAATAATGGAGCGCGGCTGGCACATTGCGCGAGGCGACACAAAACTGAAGATAATTATCGACCTGATTAA
- Protein Sequence
- MSQPIQTRTCRICLDTDCTSIVCLDDENDCLELLEFSVGLVLKPEDNPRVLCAQCAEQVKSYAEFKKQCYKSDVLWKSVVKFEAECFENNNLPKTVKDEKEYSDGDLDNDNSPEIETYFESSNNIADQKVCSGDGKYMYVNNGIEFKSKARCKRSTCDVNATDYDEAKKYETIKKSNIDVNNIADGHLICSKCSKVYANKKWLQRHVTMCCGKFKKDTGVTNIKANNKVLLCGICDFVNSDVGILNQHVNEHFINNELNCKLCNFTGYDLASMESHRYKHVSNKLKSRKCHECNKTCGSPLSHEFHYRSVHLGKPGGVCTLCNNREFKVFKTWRRHEMAHTVTKYICDHCGRKFLYRYMIESHLMDHSDVKNYCCHECGKRFKRAQGLKLHVSTVHVKTGPLNCTHCTRVFKSPHTLEKHMKRMLAEKSYRCEVCLKCYASEKALKKHEYWHSDERPHCCDICGSSYKAKSQLKLHMRKHTGEKPYLCFQCYKTFHSSSQLKRHKSVHTGIRPVKCTSCDKTFYNNGARLAHCARRHKTEDNYRPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -