Tbat019903.1
Basic Information
- Insect
- Thyatira batis
- Gene Symbol
- -
- Assembly
- GCA_905147785.1
- Location
- LR990515.1:660935-677513[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.045 3.4 8.8 0.8 1 23 412 434 412 434 0.97 2 12 0.02 1.5 9.9 6.4 1 23 441 463 441 463 0.98 3 12 0.28 21 6.3 2.1 1 23 467 489 467 489 0.93 4 12 0.00071 0.053 14.5 3.3 1 23 494 517 494 517 0.97 5 12 0.083 6.3 7.9 0.2 2 19 525 542 524 547 0.95 6 12 1.1 82 4.4 1.9 3 20 557 574 555 575 0.93 7 12 2.7 2e+02 3.2 0.1 2 19 586 603 585 605 0.92 8 12 4.5e-05 0.0034 18.2 5.3 1 23 614 636 614 636 0.98 9 12 0.013 1 10.5 3.6 2 23 664 686 663 686 0.93 10 12 3.4e-06 0.00025 21.8 0.3 1 23 692 714 692 714 0.98 11 12 4.5e-05 0.0033 18.2 2.0 1 23 720 742 720 742 0.97 12 12 0.00088 0.066 14.2 3.1 1 23 748 771 748 771 0.97
Sequence Information
- Coding Sequence
- ATGACAGAGGCGTCGATGAGAATGCTCATGTGTAGAGGATGTCTCGCTACCGACAAGCGACTGTTTGATATGCGGCAGAATCGACTGATGGAGTCGTATTGCACACTGCTTAGTACTGTTGGTCTCGGATCAGATGACCTCCCACATTACATGTGCAGCTACTGTGCCGCACTCCTGCTCAAGTGTGACACATTCAGAATCAAGTGTATAGACTCACTTATCATTCTTAGAAATGCACAACAGGATAATTTAGATCTTACCACAGAAAATATAGAAGTAGATGGATATGCATTTTTAAAACAATCCGAGTTAAATACTATAAATATTCTCGATAAAACACGTAAAAAAATGACAAAAAATACCGCTAGAGATATTCCTTCTGACTATGATGTATCTTCCGGTTCTGATGTAGCGACAGAGTCTGATACATCTTTAGACCTCAATTCAATTGATAAAGATGATTCACATACTGAAGACGAAGCTAAATTTAATATAAATGTTAATCAACAAAAGTCGAAAACTAAAAAAAATCCAAAACAATCAGATAATGAATTTCAAAGCCTCTTAACAACATATAAAGGTAATAAAGGAGACAAAAGCGGTCTGTTAAGAGATTTTAATATTAATTTTGATGGTGTTCAAAATGACAATGAAAAGAATATAAAAAGCCAATTATTAGAGAGTCTGTCAGAAATAATTAAACACGTACAGTATTCTAGTGAAACAAGTACAGAGTTACTTGGTATTTTAGACGATAATAATGATAAACGTCGAACGAAAGACAAAAATATCAACAAAACTCCAGAACAAGATACCAAACCGATTCTCAAACATGAAGGAGTAATCAAATCCGGACCTAATTTACAAAACCCAATCGATAACGAAATAGATGTAAAACCAACATTCATAAAGACCGAATTGAAAGTTGAATTTGTCGATGATATAGATACAGAACATCATAATTTCGATTCAGATGACGAAGTAGTTATAGCTGATTTAAAATCAAAACCCGAGTCGAAACGTAAGAAAGGAACTTCGAAAAAAACTGCCCTCAATTATAGAGGTTGCAAAAAGATCATTAGTAATATATTAAAGGGAAATCAGACAAAAAAAATGAAGCGTGCGGAAGAACTCTACGCCATGTATGATACAGAAGTGAAGTATTTGAGTAAAGACGAACAGATAAATGATGTTAGAGCAAGAAGGGAGTCTGATAACTACAAAAATGGTCAGTTCAAATGCGAGCTGTGCTTCAAAGGATTCCTCGTGCAAGAAACTTATGAGAATCACATGTCTTTGCATGACGATATCAGCGGCAAGTTCGTCTGTGAAATATGTCACTGTCACTTTAGAAGTAAGGCGAGGCTCTTAGGACACCAGAACCGTCACGCCAAGAAATTCACCTGCAAGGAGTGTGGACACAACACTAGACATGGTTCCCTCGCGATACAACACTATGAATGGCACAAGGGCAAGAAATACTCCTGCAAGGATTGCGGCAAGGAATTCCAAAATAAGTCTAGTCAATATGGACATATAAAAATGTGTCACCCGACGAGCGAACAGCTCGTGCGCTGCGAGATCTGCGGGGACTCCTTCAACGGACTCTCAGGGCTACAGCACCACGACAGTTATGCACATAAAGAGAAAAATACACCAGAGTGTCTTTGTACCGTCTGCGGCACCCAGTTCTACTGCTCGGATGCGTTGAAAGCTCATCGCGGCGCCGGCGGAGCGTGCTCACCGCGAGCTAAGTATTGTGTGCGCTGCGGCGGCGCCTTCCACACGCAGCTGCAGCTGGAGGAGCACGAGGCTGAGCAACGGAAGCTACAATATCAATTCAAATGCGATTTGTGCCCGAGGACGTTTAAATACTTCAGCCAGTTAAAATTACACCAGAGACACCACACGGATTCCTATCATGAGTTTATGAAGCAATATTACGAGCGAAGAGGGAAAATGGATCGGGAAGACAATTCTGAAGAGTTAGTCTGTGAGGTTTGCGGAAAGTTGTGTAAGAACACAAGACATCTGAAATCACATTACTTCTCAGCTCATTCTACGGCAAAACCGTTCAAATGTCCCACCTGTCCTAAAGCGTTCAAGTCTTCGGCATTATTAGTGACGCACAGCAGAGTACACACTGGGGAGCGCCCGTTTAAATGCGAGCACTGTCCAAAAGCGTTCCAGAATGTACAAAATCTAAAAAGACATAACTTGGTACATACAGGGGAACGTCCCCATTCCTGTGAGGTTTGCGGGAAAAGTTTCCAAAGTAGGGGTTGTGTCAAAATGCATGTGAAAACTGTGCATATGAAGATACCCATGCCGCCTAGGATCCGGAATAGGAAGAAGAAAACCGAATGA
- Protein Sequence
- MTEASMRMLMCRGCLATDKRLFDMRQNRLMESYCTLLSTVGLGSDDLPHYMCSYCAALLLKCDTFRIKCIDSLIILRNAQQDNLDLTTENIEVDGYAFLKQSELNTINILDKTRKKMTKNTARDIPSDYDVSSGSDVATESDTSLDLNSIDKDDSHTEDEAKFNINVNQQKSKTKKNPKQSDNEFQSLLTTYKGNKGDKSGLLRDFNINFDGVQNDNEKNIKSQLLESLSEIIKHVQYSSETSTELLGILDDNNDKRRTKDKNINKTPEQDTKPILKHEGVIKSGPNLQNPIDNEIDVKPTFIKTELKVEFVDDIDTEHHNFDSDDEVVIADLKSKPESKRKKGTSKKTALNYRGCKKIISNILKGNQTKKMKRAEELYAMYDTEVKYLSKDEQINDVRARRESDNYKNGQFKCELCFKGFLVQETYENHMSLHDDISGKFVCEICHCHFRSKARLLGHQNRHAKKFTCKECGHNTRHGSLAIQHYEWHKGKKYSCKDCGKEFQNKSSQYGHIKMCHPTSEQLVRCEICGDSFNGLSGLQHHDSYAHKEKNTPECLCTVCGTQFYCSDALKAHRGAGGACSPRAKYCVRCGGAFHTQLQLEEHEAEQRKLQYQFKCDLCPRTFKYFSQLKLHQRHHTDSYHEFMKQYYERRGKMDREDNSEELVCEVCGKLCKNTRHLKSHYFSAHSTAKPFKCPTCPKAFKSSALLVTHSRVHTGERPFKCEHCPKAFQNVQNLKRHNLVHTGERPHSCEVCGKSFQSRGCVKMHVKTVHMKIPMPPRIRNRKKKTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -