Tbat008178.1
Basic Information
- Insect
- Thyatira batis
- Gene Symbol
- -
- Assembly
- GCA_905147785.1
- Location
- LR990511.1:812765-817755[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.02 1.5 9.9 0.2 2 23 213 234 212 234 0.96 2 12 3.7e-06 0.00028 21.7 4.2 1 23 240 262 240 263 0.96 3 12 0.062 4.7 8.3 2.1 1 23 273 295 273 295 0.97 4 12 0.071 5.3 8.2 5.9 1 23 559 581 559 581 0.98 5 12 0.0025 0.19 12.7 3.2 2 23 587 609 586 609 0.96 6 12 0.00014 0.01 16.7 4.3 1 23 617 639 617 639 0.97 7 12 0.026 2 9.5 3.1 2 23 643 664 642 664 0.97 8 12 1.2 87 4.3 1.3 2 23 678 700 677 700 0.96 9 12 0.025 1.9 9.6 2.7 3 23 708 728 706 728 0.97 10 12 0.0016 0.12 13.3 2.8 2 23 735 756 735 756 0.98 11 12 0.0044 0.33 12.0 0.8 1 23 762 785 762 785 0.94 12 12 0.00086 0.064 14.2 4.1 1 23 789 812 789 812 0.95
Sequence Information
- Coding Sequence
- ATGGAGGAAGATATTTCTGTGAGATCTTGGTTATTTGAAGATAAGTTCTTGGACAAAGATTCTGACACAAATGAAACTTGTGAGAGACAAAATGGGGCTAAACATGCAGAAAAATATACACGTGAACCGTTATCATCCAAGAATGCTATTGAATTCTTATTAGCGGGAACTCTCAAGTCTATAGTATGCCGATATTGCCTCAATAGGACAAATTGCTTGTCGGAACTGGATCAAATATTTCAAATAGCTGGCAAAGGAGCATTGTATAAAGTCACAGTAAGAGATATGATTGCTAGTTTCCATCCTATAAAGGTTGTTGATGATCCAAATTTTCCCAACAAAATATGTAACAAATGCTTAAACCGAGCAATCAGCTCATATCTATTCACACAGCAGTGCGAACAATCAGAACGTGCCTTACGCAACTGCTTTGAAGATATATTCGAAAAACTAGAGAAACTTGACCCTCTAGAGCGTACTAAGAAACGAGGTCGCCAGAAATTGCATCCAAATCACAACATATTATATGCTGAACATGATGAGGTTATTGATTACGCTGAACCTATAATAAACCTTATAAATACGGCGACTGAACCCATTGTTACCGAGAAAAATGCCGTTGCATCAAATGAATTGGAATGCAAGAAATGCTGGAAAATATTACCAAGCTTACAATCTCTGATAAATCATGAACAAAGCCACCCAAAAACTATGTGGTATAGCTGCAAGCAGTGCGGCAAATCATTTGTCAAATACATCCAATTGAAAAAGCATCTAAATACACACCACAGCAAAGAAATCATTCCGGAGCTAAAATTCAAATGCAATATATGTGGACATGATACCAATTATTATAACGAATACTTGCAGCATTTAGAGAATCACAAGTTTAAATCCGTTCTGAATCATTTAGTTGAACGTAAGATGAATATGCTCTGTACGATTTGCTTAAATAAGGAAGGAAATATGACCAACCTTGATAAAATGGTCTGCATACATGGGGGATATCCGGAACTGACTGGTGATAAACCCTTGTACAGCATTTTAGGATCTACACTCCCAGATATGAAATACGTTCATAACTACACTGGAACAAAAATATGCGAAAAGTGCCTCGATCATGCAATCACATCATATATCTTCACAAATAGATTTAATTATATCAGAAATAGACTGAACTCTTGCGTGAGTGCTATGTTAGATAGCTTAAATAACATTGCACCAACTGAAGCAAATATGTTCATAGAAATTAATCAAAATCTCATATTCCCCTTGAATGAATGGGTAGATGAAACATTGCTAGACAATGATTCACTAGATGAAAATAAACTTAAAATTGATGTTCTAGAAGATGAATTTAGAGTTAAATCTGAAAGCGAAGAGGAGGAAGACCAGTTAGATGATGTAAAAGTAGAGAAAGAGTCAACCCAAGAAATAGCAGTTGTTAAGAATGAAGACGCTAATGTAACTAATCATGTAACTAGTTATTTAGATGATGATGAGGTACCTATCAACAATCTAGCAAGAAATGCAAAGAAAACATACATGAAAAATAAGTTAGTTAATGGATACCAGTCAAAAACTAGTACATTTGAGTCTGCTAGTAATATTTGTAGTGAATTCTTAACATTCAACAAGGATAAAAAACCTAAAAAAACGATTAGAAATTGCAAATACACTTGCCCCCTATGTTGTAAACATTTCATATCAGATTATTTCTTGAAGAAACACATTTTAAAACATGTCAATAAGAAAGTAATGTGTACAGTGTGTAAAAGACATTTCAAGTCCAAATTTTATCTATATGAACACACAAAAATGGTACACATTTTGAATTATAACAAATATTTCTCGTGTAAAACTTGCGGCAGGACATTTAGAGACAACAGCAAAATGTTGAATCATGTCAAACATCATAAAGTGAAGGTATGTCAGTTGTGCGACAAAACATTCCTTTCTCAGAAACATTTTGATGGTCACATGCAAAGGCATTCGTTTAAACTGAGGCTTATGAAGGAAAGGAAAGCTAAAACCTGCAGTTTCTGCGAGAGGGACTGTCCAAACGATAACGAACTCTCCCTACATGTAAATAAAATTCATTTGCAAATAAAACCATACGGTTGCGATATGTGCGACAAGCAATATTATACTGAATACAATTTAAAATGTCATCAAAAGTTACATAGTTTACATTCTCAAGAAAAATGCCAATTTTGTAATAAAAGTCTGAAAAGTAGGAGACAATTAGTGCTTCATGTCAGGAGGCATATTGGAGTAAAACCTTTTAGCTGCCAAATATGTGGCCTGTCCTTCTATTCTCAAATGAAGACATCACAGCACATGGCACTCTACCATGGCGGCAAATTCTGCTGTAAAGTGTGTAAAACCGTTTTCAAAACTAAATGTGGGCTTAAAGACCACATTGAGATAGTGCATAGTTTTATTTAG
- Protein Sequence
- MEEDISVRSWLFEDKFLDKDSDTNETCERQNGAKHAEKYTREPLSSKNAIEFLLAGTLKSIVCRYCLNRTNCLSELDQIFQIAGKGALYKVTVRDMIASFHPIKVVDDPNFPNKICNKCLNRAISSYLFTQQCEQSERALRNCFEDIFEKLEKLDPLERTKKRGRQKLHPNHNILYAEHDEVIDYAEPIINLINTATEPIVTEKNAVASNELECKKCWKILPSLQSLINHEQSHPKTMWYSCKQCGKSFVKYIQLKKHLNTHHSKEIIPELKFKCNICGHDTNYYNEYLQHLENHKFKSVLNHLVERKMNMLCTICLNKEGNMTNLDKMVCIHGGYPELTGDKPLYSILGSTLPDMKYVHNYTGTKICEKCLDHAITSYIFTNRFNYIRNRLNSCVSAMLDSLNNIAPTEANMFIEINQNLIFPLNEWVDETLLDNDSLDENKLKIDVLEDEFRVKSESEEEEDQLDDVKVEKESTQEIAVVKNEDANVTNHVTSYLDDDEVPINNLARNAKKTYMKNKLVNGYQSKTSTFESASNICSEFLTFNKDKKPKKTIRNCKYTCPLCCKHFISDYFLKKHILKHVNKKVMCTVCKRHFKSKFYLYEHTKMVHILNYNKYFSCKTCGRTFRDNSKMLNHVKHHKVKVCQLCDKTFLSQKHFDGHMQRHSFKLRLMKERKAKTCSFCERDCPNDNELSLHVNKIHLQIKPYGCDMCDKQYYTEYNLKCHQKLHSLHSQEKCQFCNKSLKSRRQLVLHVRRHIGVKPFSCQICGLSFYSQMKTSQHMALYHGGKFCCKVCKTVFKTKCGLKDHIEIVHSFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -